PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116124.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 311aa    MW: 34979.6 Da    PI: 9.8705
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix513.8e-1640123186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  v  L+ea++ ++   +r+klk+++We+v++++    ++++  ++++qCk+k+e+++kry+ + +++++      s++p++++l+
  XP_009116124.1  40 EWSEGAVSSLLEAYETKWALRNRAKLKGQDWEDVARHVssraSHTKSPKTQTQCKNKIESMKKRYRSESATAEG------SSWPLYSRLD 123
                     5*************************************87766777788999*****************99997......46****9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.6E-2038125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEDGDSNQEH PQPLPTNHDA SSPKKPSTSS IVVDRLKRDE WSEGAVSSLL EAYETKWALR  60
NRAKLKGQDW EDVARHVSSR ASHTKSPKTQ TQCKNKIESM KKRYRSESAT AEGSSWPLYS  120
RLDHLLRGNA STSVHPQPQP QPQAVLPLNC SAPLLLLEPP LAAVTHPPQQ PPAAQMSHGS  180
NGVGTIKEEG FKDDHKPERA TEMDTDSSTP VLCREKAKVR PKKVRRRYKE EKEEIAGSIR  240
WLAEVVMRTE RARMETMKEI ERMRAEAEVK RGEMDLKRTE IMANTQIEIA RLFAASVHKG  300
GVDSSLRIGR N
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.220940.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116124.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116124.10.0PREDICTED: trihelix transcription factor ASIL1
TrEMBLA0A397Y2T00.0A0A397Y2T0_BRACM; Uncharacterized protein
TrEMBLM4CS770.0M4CS77_BRARP; Uncharacterized protein
STRINGBra007069.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98592533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-136sequence-specific DNA binding transcription factors