PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114993.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 387aa    MW: 42807.9 Da    PI: 9.0836
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114993.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.14.8e-1819109273
        trihelix   2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                     Wt +e+++Liea++ ++er  r++                    ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r +
  XP_009114993.1  19 WTLNETMVLIEAKKMDDERRMRRSiglpaaeqshdsrsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 109
                     **************666666665445555666666667777669999****************************************9843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7131194IPR017877Myb-like domain
PfamPF138373.8E-1318109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAGKSGGLAM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAAEQ SHDSRSSSGN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVES SFAAESSSSA  120
AAETGTYWTM EKSERKERNL PSNMSPQTYQ ALFDVVESKT HPSSTAATNV TAAVAAAAAS  180
GNGSGGGLQI QKMIQQQQEQ GLGFVQKHQM IQPHVLLPLH PPPPPPLPPS QALQPRPLLL  240
SPPPPPSFHA QPILPTKDTS SDSDTSEHPD TSPAKRRRTI PTTTAGPSGA GRGNAETEEG  300
ETVVAAAFSR SASVIANAIR ESEERQDRRH KEVMSLEERR LMIEESNVQI NREGMNGLVE  360
AINKLASSIF AFASSSHHNN QHQGGPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114993.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894440.0AC189444.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070J23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114993.10.0PREDICTED: uncharacterized protein LOC103840254 isoform X1
TrEMBLM4E3240.0M4E324_BRARP; Uncharacterized protein
STRINGBra023175.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.12e-67Trihelix family protein