PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009108938.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 307aa MW: 35281.3 Da PI: 4.5717

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009108938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.4	2.8e-11	20	98	2	80
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 Wt + l L++ +e++ +++ + ++W +s+++ + ++r+ +qC+ kw++l +y +i ++e++++ +++s ++ XP_009108938.1 20 WTLKDCLILVNEIAAVESDCSNALSSFQKWTMISDNCNALDVHRNFNQCRRKWDSLVSDYSQIMKWESQERGRVHSYWS 98 9999999*************************************************************99888877776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.051	20	76	IPR017877	Myb-like domain
Pfam	PF13837	5.6E-8	20	97	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MEEGTSSGSR RTRSQVAPDW TLKDCLILVN EIAAVESDCS NALSSFQKWT MISDNCNALD 60 VHRNFNQCRR KWDSLVSDYS QIMKWESQER GRVHSYWSLS VEKRRKLNLP GNVDNEVFQA 120 INAVVMIQEN KDGSEPDSDS DPEAQEDFDV VDVTAELGSK RSRQRTMVVM KENPPHKRKT 180 EEERRRKNIQ EQRAKATHQK NKNMEVKKKP VVEISTDVEE EEEEEEEEEE TMSIEEEIKA 240 LEAKLGEKAD MIHAIVGRNL AKGSETEDDV GIEDKLKFVK QQGDELIACL SEIVNTLDRL 300 REVPQEI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	164	KRSRQR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.7607	0.0	bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009108938.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009108938.1	0.0	PREDICTED: trihelix transcription factor ASR3
Refseq	XP_018508968.1	0.0	PREDICTED: trihelix transcription factor ASR3
TrEMBL	M4D197	0.0	M4D197_BRARP; Uncharacterized protein
STRING	Bra010246.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12154	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	1e-112	sequence-specific DNA binding transcription factors