PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009107174.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 962aa MW: 107912 Da PI: 7.2548

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009107174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.1	4.4e-08	179	232	22	75
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 +rgk ++ + +ev++++ + g++r +k kw+n+ ++++k++e+ek++ e+ XP_009107174.1 179 GRGKTRAEKDREVAEFLNRNGVNRDSKIAGTKWDNMLGEFRKVNEWEKGGDREK 232 3567999999**************************************985444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00180	5.00E-10	808	951	No hit	No description
SuperFamily	SSF56112	1.1E-13	810	951	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	2.0E-6	810	914	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 962 aa Download sequence Send to blast
MGETTKGDAT KPSPNQISSP KDSSLDHQTP TPSPIHHHHQ SFHPSPIFIS TVSSPGAPII 60 PKRPRFISSS GLSPPQWKAL PSPSTLPTAA TFPSLPSPST AVVAASSTET AASSPLEQEG 120 INTEKQQLET ESFQHKFRKG KYVSPVWKPH EMLWLAKAWR VQYQKQETGP GSGSGSGEGR 180 GKTRAEKDRE VAEFLNRNGV NRDSKIAGTK WDNMLGEFRK VNEWEKGGDR EKYGKSYFRL 240 SPYERKQHRL PASFDEEVYQ ELALFMGPRA RALSIKRSSG GAPADVTLTP PPAETFPPIL 300 HPPFMTSRDD DVDNNRITSI GRGKRLALSI AGDDHPQYPY THNIGRGSGL FSNRSLYYNP 360 SCERIPSSSS SSSSLKDLRR VGKIRLTWEE SVNLWAEEGE VDYGRIRVSG SSFLNADELT 420 YLDDSMVACT MESFEDGPLR GFSLDKFISG QHLKVFGRQK STSSSAPSPS VNMANSIDRA 480 QLPLAVPINK SISTLEFQDP SEHYLSSLRV PAANPPSLFE LGRYLQEPPP ENLRFPIRRD 540 VYKDLPPGKE LFFSTSTTEL LDCRAVTYDI ISPVMFRLSP NSVISSKDSL IPLWDDCVNR 600 MVSKFCDMVV LRKPDSSSFV ENVQDQWPNV VGFVKGFGLW RGEEVEKVRE GAAVPSSLLV 660 KKILWSYDDL PYILGYHAIG FTVTFCALSR SSQDRVVCTD LYSFDVSSPS DRIKALVPCY 720 RLASLLHLLA DRCTMRHLCY NDFERISHRD FVTEITPNTV TKYYSSKRKW SVVKGIYDFL 780 DQRVPHAEHL NSAREKELSL SFKPRGVRVK PCNVDQLIES LMCVTRALVA LHDLSFMHRD 840 MRWENVMRSA EMTTTTSDAE WFVCGFDEAA ESPQLNPHRS MDEEEEEENG RQAPEMERGL 900 HAVKVDVWGV GYMIKTCGLT NVPKMLRELQ GKCLEPNQEN RPTAADCFHH LLQVQSASSS 960 SY

Sequence ? help Back to Top

Protein Sequence Length: 962 aa Download sequence Send to blast

MGETTKGDAT KPSPNQISSP KDSSLDHQTP TPSPIHHHHQ SFHPSPIFIS TVSSPGAPII  60
PKRPRFISSS GLSPPQWKAL PSPSTLPTAA TFPSLPSPST AVVAASSTET AASSPLEQEG  120
INTEKQQLET ESFQHKFRKG KYVSPVWKPH EMLWLAKAWR VQYQKQETGP GSGSGSGEGR  180
GKTRAEKDRE VAEFLNRNGV NRDSKIAGTK WDNMLGEFRK VNEWEKGGDR EKYGKSYFRL  240
SPYERKQHRL PASFDEEVYQ ELALFMGPRA RALSIKRSSG GAPADVTLTP PPAETFPPIL  300
HPPFMTSRDD DVDNNRITSI GRGKRLALSI AGDDHPQYPY THNIGRGSGL FSNRSLYYNP  360
SCERIPSSSS SSSSLKDLRR VGKIRLTWEE SVNLWAEEGE VDYGRIRVSG SSFLNADELT  420
YLDDSMVACT MESFEDGPLR GFSLDKFISG QHLKVFGRQK STSSSAPSPS VNMANSIDRA  480
QLPLAVPINK SISTLEFQDP SEHYLSSLRV PAANPPSLFE LGRYLQEPPP ENLRFPIRRD  540
VYKDLPPGKE LFFSTSTTEL LDCRAVTYDI ISPVMFRLSP NSVISSKDSL IPLWDDCVNR  600
MVSKFCDMVV LRKPDSSSFV ENVQDQWPNV VGFVKGFGLW RGEEVEKVRE GAAVPSSLLV  660
KKILWSYDDL PYILGYHAIG FTVTFCALSR SSQDRVVCTD LYSFDVSSPS DRIKALVPCY  720
RLASLLHLLA DRCTMRHLCY NDFERISHRD FVTEITPNTV TKYYSSKRKW SVVKGIYDFL  780
DQRVPHAEHL NSAREKELSL SFKPRGVRVK PCNVDQLIES LMCVTRALVA LHDLSFMHRD  840
MRWENVMRSA EMTTTTSDAE WFVCGFDEAA ESPQLNPHRS MDEEEEEENG RQAPEMERGL  900
HAVKVDVWGV GYMIKTCGLT NVPKMLRELQ GKCLEPNQEN RPTAADCFHH LLQVQSASSS  960
SY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009107174.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009107174.1	0.0	PREDICTED: uncharacterized protein LOC103832832
TrEMBL	A0A3P6D3D0	0.0	A0A3P6D3D0_BRACM; Uncharacterized protein
STRING	Bo9g103570.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	7e-08	Trihelix family protein