 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009107062.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
Trihelix |
| Protein Properties |
Length: 335aa MW: 36763.3 Da PI: 6.8085 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009107062.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 51.8 | 2.2e-16 | 75 | 161 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+++ +++Liea e+ ++ ++g lk+++W+ev++++ r+ ++ ++ +qCk++++ ++k+yk++k+ ++ + s++ +f++le
XP_009107062.1 75 CWSEEATKVLIEAWGERFSEPGKGTLKQQQWKEVAEVVnesRQCKYLKTDVQCKNRIDTVKKKYKQEKAKIASG--DGPSKWLFFKKLE 161
7*************************************988888999*************************98..56668******98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009733 | Biological Process | response to auxin |
| GO:0009793 | Biological Process | embryo development ending in seed dormancy |
| GO:0010029 | Biological Process | regulation of seed germination |
| GO:0010431 | Biological Process | seed maturation |
| GO:0048831 | Biological Process | regulation of shoot system development |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MDEEDETRSP KSPGDSLSPA PSSPPPILPT SDVTVASATK PPQSLALVVH TPSVVGGSRN 60
GRSGGGGGGG GRDDCWSEEA TKVLIEAWGE RFSEPGKGTL KQQQWKEVAE VVNESRQCKY 120
LKTDVQCKNR IDTVKKKYKQ EKAKIASGDG PSKWLFFKKL ESLIGGAGGN NTKAPLGRRQ 180
GNKGTVLKRG SDSMRWHFRK RSASETESES DPEPEPEPEP EHSPPDSAES LPPPPPPSQL 240
VSKRLKMDEL GGSGVGDVAK AILGFTEAYE KAETAKLKLM MELEKERMKF VKEMELQRMQ 300
FLKTQMEMTQ NDREEERSKP RINDDDVKNN GDVSS
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 187 | 200 | KRGSDSMRWHFRKR |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Induced by seed imbibition with a peak after 1 hour and then steadily decreases to be barely detectable at day 3. {ECO:0000269|PubMed:19155348}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
