PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104155.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 316aa    MW: 35617.9 Da    PI: 9.7934
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.93.1e-1427122286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                     W+++ + +Li+a  ++  +l+rg l++++W+ev++++             ++ +  r+ +qCk++++ l+k+yk +k++ +++    +s +p+f+
  XP_009104155.1  27 WSEEATFTLIQAWGRRYVDLSRGGLRQKHWQEVANAVndrhfntgrnvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSSE--SYVSAWPFFS 119
                     ************************************************997777789************************95..56669***** PP

        trihelix  84 qle 86 
                     +l+
  XP_009104155.1 120 DLD 122
                     *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.6E-2425124No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MKDAVNDSFS PGSSRPSPSM LSREDYWSEE ATFTLIQAWG RRYVDLSRGG LRQKHWQEVA  60
NAVNDRHFNT GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK VEKARVSSES YVSAWPFFSD  120
LDELLRETFP ATSSAGPDNS QRPSPSLPIV PVPVAPRSAI SRRPAPAIMS LGGDNLLGFR  180
GNLNAFAAAA AAAASPAYED DSDGSRSRSS GGNNRKRERE VEIEIEEKKG YKEVAEAIER  240
FGKIYEKVEE RKRKEMVELE KQRMRFAKEL ECHRMQLFTE MQVRLHKLRR SSGSNGPTSS  300
ANAALEYGMM DFPSYF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.261190.0flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104155.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892211e-116AC189221.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104155.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLM4CGL30.0M4CGL3_BRARP; Uncharacterized protein
STRINGBra003346.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-127sequence-specific DNA binding transcription factors