PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102668.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 374aa    MW: 41037.3 Da    PI: 9.9757
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102668.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix582.5e-1819108272
        trihelix   2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                     Wt +e+++Liea++ ++er  r++                    ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r 
  XP_009102668.1  19 WTLNETMVLIEAKKMDDERRMRRSiglpapeqsqdsrsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERGRL 108
                     **************666666665445556666666666777669999***************************************9974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7131194IPR017877Myb-like domain
PfamPF138378.3E-1418109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MADQSGGLGL MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEQ SQDSRSSSGN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERGRLES SFASGSSSSA  120
AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFNVVESKT HPSSTAATAI TAAVAAAAAE  180
TGSGNGSGGG LHIPKVIQQQ GLGFVPQHQM IQPPVLLPLP RPPPPPSQPL QPRPLLLPPP  240
PQPSFHAQPI LPTVDTSPAK RRRTMPTTAA GTSGGGGGGN AEMEEGESVV AAALSRSASV  300
IANAIRESEE RQDRRHKEVM SLKERRLKIE ETNVEMNREG MSGLVEAINK LANSMFALAS  360
STSRHNNQHQ GGPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102668.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894440.0AC189444.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070J23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102668.10.0PREDICTED: uncharacterized protein LOC103828785 isoform X2
RefseqXP_022544404.10.0uncharacterized protein BNAA07G06920D isoform X2
TrEMBLA0A3P6B8R90.0A0A3P6B8R9_BRACM; Uncharacterized protein
TrEMBLM4DEI50.0M4DEI5_BRARP; Uncharacterized protein
STRINGBra014906.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.11e-123Trihelix family protein