PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102667.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 386aa    MW: 42328.4 Da    PI: 9.5383
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102667.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.92.6e-1819108272
        trihelix   2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                     Wt +e+++Liea++ ++er  r++                    ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r 
  XP_009102667.1  19 WTLNETMVLIEAKKMDDERRMRRSiglpapeqsqdsrsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERGRL 108
                     **************666666665445556666666666777669999***************************************9974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7131194IPR017877Myb-like domain
PfamPF138378.8E-1418109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MADQSGGLGL MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEQ SQDSRSSSGN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERGRLES SFASGSSSSA  120
AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFNVVESKT HPSSTAATAI TAAVAAAAAE  180
TGSGNGSGGG LHIPKVIQQQ GLGFVPQHQM IQPPVLLPLP RPPPPPSQPL QPRPLLLPPP  240
PQPSFHAQPI LPTKDSSSDS DTNEHSDTSP AKRRRTMPTT AAGTSGGGGG GNAEMEEGES  300
VVAAALSRSA SVIANAIRES EERQDRRHKE VMSLKERRLK IEETNVEMNR EGMSGLVEAI  360
NKLANSMFAL ASSTSRHNNQ HQGGPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102667.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102667.10.0PREDICTED: uncharacterized protein LOC103828785 isoform X1
RefseqXP_013653078.10.0uncharacterized protein BNAA07G06920D isoform X1
TrEMBLA0A3P6B8R90.0A0A3P6B8R9_BRACM; Uncharacterized protein
TrEMBLM4DEI50.0M4DEI5_BRARP; Uncharacterized protein
STRINGBra014906.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.11e-135Trihelix family protein