PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy12g00720
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family NF-YC
Protein Properties Length: 276aa    MW: 31409.4 Da    PI: 5.4709
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy12g00720genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC64.71.7e-20131221898
          NF-YC   8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                    + +++++d +  +lPl+r+k+i+k d+ vk+ s +a  l++ka elf   lt  +    +  kr+t+k  d++ av + ++fdfl d+v  
  Bathy12g00720 131 SMMNQDKDGNSLSLPLSRVKRIMKLDKSVKVASGDATKLITKATELFCEMLTQSALGSMKLGKRKTIKYLDVERAVLKKQKFDFLHDHVSA 221
                    448899999999********************************************9******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF470951.14E-131277IPR009071High mobility group box domain
SMARTSM003981.3E-101388IPR009071High mobility group box domain
PROSITE profilePS5011812.8791487IPR009071High mobility group box domain
PfamPF090111.2E-101573IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.1E-131576IPR009071High mobility group box domain
SuperFamilySSF471135.32E-19111215IPR009072Histone-fold
PfamPF008083.3E-14143206IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-22144220IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MPPKKPSGPG GGSGKRRPSA YIVFTTENRE SAKKELNEKG NLKPGMGDIA KLISGRWKNL  60
TEEEKQKFKE KCEKEFDEKE ERERNERADE KKDVEDKDKK DDDDDEDEED LPKEDGMTEA  120
ERLVQQTQMQ SMMNQDKDGN SLSLPLSRVK RIMKLDKSVK VASGDATKLI TKATELFCEM  180
LTQSALGSMK LGKRKTIKYL DVERAVLKKQ KFDFLHDHVS AMKPKEGEPK KMTEKDVEVA  240
DEDGENKKEV ETHGSKKISD FFSKKTEEKE NEEVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_B4e-131442201591Putative transcription factor C16C4.22
5y27_B4e-131442201591Putative transcription factor C16C4.22
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822670.0FO082267.1 Bathycoccus prasinos genomic : Chromosome_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007509815.10.0nuclear transcription factor Y subunit gamma
TrEMBLK8F2C80.0K8F2C8_9CHLO; Nuclear transcription factor Y subunit gamma
STRINGXP_007509815.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46741111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50490.11e-12nuclear factor Y, subunit C5