PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy10g03780
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family NF-YC
Protein Properties Length: 282aa    MW: 31018.8 Da    PI: 4.3755
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy10g03780genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC383.7e-1213931697
          NF-YC 16 fknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97
                    kn +l  arik+++++de+v +i   +P +++ka elf+ +l   +   a     r ++   ++ a++  d fdfl d+v 
  Bathy10g03780 13 NKNANL-AARIKRMMQKDEEVGKIVKTTPLVMAKALELFLTKLFKATADTALAHGARIINPVHLKGAISDNDEFDFLEDVVK 93
                   444554.48*********************************988888888889999**********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.19E-162093IPR009072Histone-fold
PfamPF008081.4E-112079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.3E-192093IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSGHQTTAFS HNNKNANLAA RIKRMMQKDE EVGKIVKTTP LVMAKALELF LTKLFKATAD  60
TALAHGARII NPVHLKGAIS DNDEFDFLED VVKGVPDLPP PPDPAELAAK LLERVDEDGN  120
PKKKEKKKKE KKSSATNPKG KGKGGNGGKK RKNNDEEDDD SEDDDEEFDE DEEDTDEEED  180
EYESDDDSEE EEEKPVVTTT SRSGRKISGP KSYAEDDDAK KKKKKSPVTK KAKKSKAPAP  240
RKEEEEEEEE EADAAAGNLG SFDDDDLVGV AIPAQEDDYD E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220230KKKKKSPVTKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822690.0FO082269.1 Bathycoccus prasinos genomic : Chromosome_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510786.10.0predicted protein
TrEMBLK8EK000.0K8EK00_9CHLO; Uncharacterized protein
STRINGXP_007510786.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP33431313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.13e-19NF-YC family protein