PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy06g01510
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family HB-other
Protein Properties Length: 500aa    MW: 57419.2 Da    PI: 4.8904
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy06g01510genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.91.7e-084434762154
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    k + p++ e++ LA+k+gLt++qV+ WF N Ra+
  Bathy06g01510 443 KRPVPTKVEKKMLAEKTGLTQTQVTDWFVNARAR 476
                    5788*****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.0E-5414484IPR001356Homeobox domain
PROSITE profilePS5007111.11415480IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-18419483IPR009057Homeodomain-like
SuperFamilySSF466899.84E-11420484IPR009057Homeodomain-like
PfamPF059207.9E-11441476IPR008422Homeobox KN domain
CDDcd000868.35E-7445481No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MDDDFLTFFR VEDISLKDID MNVERDYEDF DLDALFLKSS NVTFSSEETT TTEEEEDQKK  60
MKKIKVKKDE DEDEDAMMRA FLFNCADEYV EKFWTVSEDV FLNKMWQKPS TKPTPSSASS  120
DETSEEDESS GALFLDRLEA LAKEDEDVKA LFFLDDVTPA AEDGNEEKGF DLSRMTLSED  180
IRGNKNVLGE KLAANVRRHA RDVLLFELER AGFLTAAEKK TKKKTKKQDE KEEDTNATIP  240
TSPTRTPKKS STIQPQPWDN LSFAIDRIRE LQKSVVQIAS SRSLNPSKNN YDDQKINIVA  300
DNVCSSLRDL NNIETRQLNR AKKAMKTTLS VPDGRVLRVI EDKFKHSRKV ALVAFEKFCA  360
KTTTTCEHNS IPRDDQENDK KLVNTPTRDT KHLKSEEETR GENDDVDDDD DDEGEKSKRH  420
GKRVKKILSE WLYENFYPTG TRKRPVPTKV EKKMLAEKTG LTQTQVTDWF VNARARLWKP  480
RVEGIVRSVI DELKNKEGM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218226KKTKKKTKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822730.0FO082273.1 Bathycoccus prasinos genomic : Chromosome_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007512437.10.0predicted protein
TrEMBLK8EFX10.0K8EFX1_9CHLO; Uncharacterized protein
STRINGXP_007512437.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP722266
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.19e-14BEL1-like homeodomain 5