PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631409.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 313aa    MW: 33611.6 Da    PI: 7.626
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.65.3e-08445439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    r C+ + +  ++l C+ +  +lC +C  ++H+       H++
  XP_013631409.1  4 RPCDSCRSAAATLLCRADAAFLCGECDGKIHSAnklasrHER 45
                    68*****************************65677777775 PP
2zf-B_box26.61.3e-084691342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     + C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  XP_013631409.1 46 VWLCQVCEQSPAHVTCKADAAALCVTCDRDIHSAnplsrrHERVPV 91
                    689*****************************66899999999986 PP
3CCT68.81.5e-23248291144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  XP_013631409.1 248 REARVLRYREKRKNRKFEKTIRYASRKAYAEVRPRIKGRFAKRT 291
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-13148IPR000315B-box-type zinc finger
PROSITE profilePS501199.783148IPR000315B-box-type zinc finger
PfamPF006432.8E-6446IPR000315B-box-type zinc finger
CDDcd000211.55E-7448No hitNo description
PROSITE profilePS5011910.8654491IPR000315B-box-type zinc finger
PfamPF006435.7E-74691IPR000315B-box-type zinc finger
CDDcd000211.07E-84791No hitNo description
SMARTSM003361.6E-104991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.618248290IPR010402CCT domain
PfamPF062032.2E-17248290IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MASRPCDSCR SAAATLLCRA DAAFLCGECD GKIHSANKLA SRHERVWLCQ VCEQSPAHVT  60
CKADAAALCV TCDRDIHSAN PLSRRHERVP VTPFYDAPSA QGGSSSAAKS ASSSANFLNT  120
EDADVSMEAA SWLLPNSSVK EGVVEIPNLF ADLDYSAVVD PKMEASENSS GNDGVVPVQT  180
KALFLSEDYF SFDISASKTT FPHGFSCINQ TVSSTSLDVP VVPEGGAVTE ISRTAAATPA  240
VQLSPAEREA RVLRYREKRK NRKFEKTIRY ASRKAYAEVR PRIKGRFAKR TDSRVNDGGD  300
GGVYGGFGVV PSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.56320.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631409.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0526900.0AF052690.1 Raphanus sativus CONSTANS-like 1 protein (COL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631409.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 3
RefseqXP_013687100.10.0zinc finger protein CONSTANS-LIKE 3
SwissprotQ9SK531e-148COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A0D3C1X20.0A0A0D3C1X2_BRAOL; Uncharacterized protein
STRINGBo4g156090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-134CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]