PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623273.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 412aa    MW: 45084.4 Da    PI: 6.9115
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623273.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.9e-17129178155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_013623273.1 129 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 178
                     78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-15129186IPR016177DNA-binding domain
PfamPF008474.4E-9129178IPR001471AP2/ERF domain
SMARTSM003807.9E-33130192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-17130186IPR001471AP2/ERF domain
PROSITE profilePS5103217.82130186IPR001471AP2/ERF domain
CDDcd000185.06E-11130185No hitNo description
SMARTSM003808.2E-5222270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MLDLNLDADS PESTQYADRQ TSDGSGNRVD ESGTSTSSVI NADADDDSCS TRAFTHSFDI  60
LKVGGGDEST ASIAGVTKEF FPVAGDCGHL RGSSSRSWMD LSFDTKSVAP APAPAQVRKS  120
RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD RAAIKFRGVD  180
ADINFTVGDY EEDMEQVQNL SKEEFVHILR RQSTGFSRGS SKYRGVTLHK CGGWEAGMAQ  240
LLAKKAYNKA AISSNGREAV TNFELSTYQN EINSESGHDK LDLNLGISLS PGNAAKQNGR  300
FSHFPSNPYE TPPGVSWTID TEFMGKPVNT PLPYGSSDHR ANFKENISEA EGGMMSNWGW  360
HRPGKTSTMR PQQPGAQPPQ LFSVAAASSG FSNFRQQPPS ENASHGYFYP QF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623273.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894320.0AC189432.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068E07, complete sequence.
GenBankAC2409850.0AC240985.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008O16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623273.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
SwissprotQ9SK030.0RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A0D3B7870.0A0A0D3B787_BRAOL; Uncharacterized protein
STRINGBo3g040110.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.10.0related to AP2.7