PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013618677.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 345aa MW: 38497.1 Da PI: 7.2658

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013618677.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	222.4	9.1e-69	115	281	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel.........kskkqsa 85 r+g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s+ ++a++kr re +s + + XP_013618677.1 115 RQGGTNCQDCGNQAKKDCPHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSATSRetQNAKAKRLREAnggdnddkdRSGGSGS 209 68999****************************************************999998844333444444447777777666677788 PP DUF702 86 lsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 + +t+l++a+s++ +e s+ lP+evss+avfrcvrvss+++ +e+e+aYqtav+igGhvfkGiLydqGl++ XP_013618677.1 210 ALATRLVNANSNSGFEESQnLPPEVSSPAVFRCVRVSSMENdeDEQEYAYQTAVNIGGHVFKGILYDQGLDQ 281 88999999999999987666***************98434556********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.1E-63	118	280	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.7E-27	120	162	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.5E-26	230	279	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MAGFFYLGGR DNINNKQDHH HHVDKDHHQQ DKSNYLYLYK DEIYNTNKGF EIWPPQYFQQ 60 QQQQQQQQNH VTASTNLYSF GMVPSSSNNN NNNRSRSLYF NVVSDHEPGG FSVTRQGGTN 120 CQDCGNQAKK DCPHLRCRTC CKSRGFHCQT HVKSTWVPAA KRRERLAQLA SLQHHSATSR 180 ETQNAKAKRL REANGGDNDD KDRSGGSGSA LATRLVNANS NSGFEESQNL PPEVSSPAVF 240 RCVRVSSMEN DEDEQEYAYQ TAVNIGGHVF KGILYDQGLD QDHHHQLDLL ASTATTTNAE 300 EIAAKTAVTV AANTNNGLMI DPSSLYPSQL NSFIAGTPFF TPPRS

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MAGFFYLGGR DNINNKQDHH HHVDKDHHQQ DKSNYLYLYK DEIYNTNKGF EIWPPQYFQQ  60
QQQQQQQQNH VTASTNLYSF GMVPSSSNNN NNNRSRSLYF NVVSDHEPGG FSVTRQGGTN  120
CQDCGNQAKK DCPHLRCRTC CKSRGFHCQT HVKSTWVPAA KRRERLAQLA SLQHHSATSR  180
ETQNAKAKRL REANGGDNDD KDRSGGSGSA LATRLVNANS NSGFEESQNL PPEVSSPAVF  240
RCVRVSSMEN DEDEQEYAYQ TAVNIGGHVF KGILYDQGLD QDHHHQLDLL ASTATTTNAE  300
EIAAKTAVTV AANTNNGLMI DPSSLYPSQL NSFIAGTPFF TPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013618677.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU205267	0.0	GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013618677.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	0.0	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A0D3AQR3	0.0	A0A0D3AQR3_BRAOL; Uncharacterized protein
STRING	Bo2g083970.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-159	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]