PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013611790.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 345aa    MW: 37323.7 Da    PI: 6.6929
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013611790.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.74.2e-07436436
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                    + C+ +++  + l+C+ +  +lC +C ++ H  
  XP_013611790.1  4 KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAA 36
                    58***************************9954 PP
2zf-B_box27.56.5e-094691342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  XP_013611790.1 46 VWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
                    689*****************************66899999*99986 PP
3CCT70.15.7e-24278321144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  XP_013611790.1 278 REARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 321
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.2E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.438148IPR000315B-box-type zinc finger
PfamPF006432.9E-5443IPR000315B-box-type zinc finger
CDDcd000218.79E-9548No hitNo description
PROSITE profilePS5011910.8934491IPR000315B-box-type zinc finger
PfamPF006433.2E-74691IPR000315B-box-type zinc finger
CDDcd000219.81E-104791No hitNo description
SMARTSM003361.3E-104991IPR000315B-box-type zinc finger
PfamPF062036.6E-18278320IPR010402CCT domain
PROSITE profilePS5101716.767278320IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSG ADGSGKNTAV NFLNDCYFTD  120
LDGNVSREEE EEEAASWLLP NPKTTAPAVP GDSPEMNTGQ GFMFPDLDLD YGTVDPKLES  180
REQNSSGTDG VVPVETRRVG VPTVNENCYE LDFTGGSKGF TTYGHNCISH SVSSSSLEVG  240
VVPDGGSVAD VSYPYGGPAT SGTDPGTQRA VPLTSAEREA RVMRYREKRK NRKFEKTIRY  300
ASRKAYAEMR PRIKGRFAKR TDTSKSNDVV GHGGMFSGFG LVPTF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.89500.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013611790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU9497890.0KU949789.1 Raphanus sativus var. raphanistroides isolate Rs-5 CONSTANS-like zinc finger protein 4 (COL4) gene, partial cds.
GenBankKU9497920.0KU949792.1 Raphanus sativus var. raphanistroides isolate Rs-8 CONSTANS-like zinc finger protein 4 (COL4) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611790.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T90.0COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A0D3E1E80.0A0A0D3E1E8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DAT20.0A0A3P6DAT2_BRAOL; Uncharacterized protein
STRINGBo9g011530.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.10.0CONSTANS-like 4