PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610158.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 317aa    MW: 37609.9 Da    PI: 6.7141
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610158.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.16.3e-2548130186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ +e+++L+ +r+e+++++ ++k++k lWe v++km+++gf r+++qCk+kw+nl +ryk+++++e +     ++++py+++++
  XP_013610158.1  48 QWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEA---IRQQFPYYNEIQ 130
                     7********************************************************************85...56689****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.7E-445107IPR001005SANT/Myb domain
SuperFamilySSF466892.31E-547121IPR009057Homeodomain-like
CDDcd122031.21E-2147109No hitNo description
Gene3DG3DSA:1.10.10.607.8E-548104IPR009057Homeodomain-like
PfamPF138372.9E-2048132No hitNo description
PROSITE profilePS500908.14249105IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDQRNPFHHH HHHHHQHHHL IQQQQLPPPP QSTTAAMDPG GGGERIPQWS LEETKELLGI  60
REELDQTFME TKRNKLLWEV VAAKMADKGF ARTAEQCKSK WKNLVTRYKA CETTEPEAIR  120
QQFPYYNEIQ SIFTARMQRV LWSEATEAST SSKRKNHQFS SDEEEEEEAE EPNQSINEEL  180
VAFVETQEKV ITTSTCTNPR KRAKKGKGIT GSTKAETAGS TLKEILEDFM RQTVKMEKEW  240
RDAWEMKERE REKRETEWRR RMSELEEERS ATERRWMERE NERRLREEAR AQKRDTIIDI  300
LLSKLNKDKN DDQHQGF
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610158.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2716770.0AY271677.1 Arabidopsis thaliana transcription factor GT-3a (GT3A) mRNA, complete cds.
GenBankBT0289260.0BT028926.1 Arabidopsis thaliana At5g01380 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610158.10.0PREDICTED: trihelix transcription factor GT-3a-like
RefseqXP_013732747.10.0trihelix transcription factor GT-3a
SwissprotQ9SDW01e-143TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A078FAR20.0A0A078FAR2_BRANA; BnaCnng03970D protein
TrEMBLA0A0D3EIG80.0A0A0D3EIG8_BRAOL; Uncharacterized protein
STRINGBo9g186070.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-132Trihelix family protein