PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013596921.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 349aa MW: 38274.8 Da PI: 6.617

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013596921.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	224.2	2.6e-69	116	280	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrel......kskkq 83 r+g+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaakrrer++qlaa+ sk++++ ++++ +++r++ XP_013596921.1 116 RQGNMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERRAQLAALPSKRSREPssgggggDDDDYDDDRDDdenggqGGGGG 210 7899**************************************************999888877678999993344444444334444455678 PP DUF702 84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 sal++ ++++a+s+ le ++lP+e+ss+avfrc+rvss+dd++ee+aYqt+v+igGhvfkGiLydqG+++ XP_013596921.1 211 SALACIRVVNASSS-GLESNHLPPEISSPAVFRCIRVSSIDDDDEEYAYQTVVDIGGHVFKGILYDQGPSD 280 899999999765.99999************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.3E-63	119	279	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.2E-27	121	163	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.0E-27	230	278	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MAGMFNLGGR DNNKQDHLHH HMDKDHNEDK SSNHLYLYKE EIYNNNNRGF EIWPSQYFQQ 60 QQQNHVAPPT NFLSFGMVPS GGSNNNDRSS NRSLYFNVVS DHERIRSSPG RFTVTRQGNM 120 NCQDCGNQAK KDCPHMRCRT CCKSRGFDCQ THVKSTWVPA AKRRERRAQL AALPSKRSRE 180 PSSGGGGGDD DDYDDDRDDD ENGGQGGGGG SALACIRVVN ASSSGLESNH LPPEISSPAV 240 FRCIRVSSID DDDEEYAYQT VVDIGGHVFK GILYDQGPSD HPYSSSPTAA EACQRHINLL 300 ASTALASTST TATNNTKASI DPSSLYTPTA APFSTCITTG TPFFPPPRS

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MAGMFNLGGR DNNKQDHLHH HMDKDHNEDK SSNHLYLYKE EIYNNNNRGF EIWPSQYFQQ  60
QQQNHVAPPT NFLSFGMVPS GGSNNNDRSS NRSLYFNVVS DHERIRSSPG RFTVTRQGNM  120
NCQDCGNQAK KDCPHMRCRT CCKSRGFDCQ THVKSTWVPA AKRRERRAQL AALPSKRSRE  180
PSSGGGGGDD DDYDDDRDDD ENGGQGGGGG SALACIRVVN ASSSGLESNH LPPEISSPAV  240
FRCIRVSSID DDDEEYAYQT VVDIGGHVFK GILYDQGPSD HPYSSSPTAA EACQRHINLL  300
ASTALASTST TATNNTKASI DPSSLYTPTA APFSTCITTG TPFFPPPRS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: In young plants, detected at a low level only in the root tips and lateral root primordia. In fully open flowers, primarily observed in the filaments and anthers. {ECO:0000269\|PubMed:20706774}.
Uniprot	TISSUE SPECIFICITY: Mainly expressed in the filaments of flowers, the shoot apex regions and pollen. Also present in leaves. {ECO:0000269\|PubMed:20706774}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013596921.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013596921.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 7-like
Swissprot	Q9FXH7	1e-168	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	A0A0D3D806	0.0	A0A0D3D806_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6DZZ9	0.0	A0A3P6DZZ9_BRAOL; Uncharacterized protein
STRING	Bo7g062240.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	1e-149	SHI-related sequence 7

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]