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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013596368.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
SRS |
| Protein Properties |
Length: 309aa MW: 33257.4 Da PI: 7.5682 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013596368.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 221.6 | 1.6e-68 | 85 | 238 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96
rs t+sC+dCGnqakkdC+h RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s + + s +++++ ++ +ss++l+s ++
XP_013596368.1 85 RSITISCRDCGNQAKKDCTHLRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGRGGSGGSSIPKRHRDTTLPETSSSRLPSDSA 179
67899*****************************************************9999888755555555555556888889999****** PP
DUF702 97 kkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
e+ ++s+P+evss+a+frcv++s+vd+ g+ ++aYqt+v+igGh+fkGiLydqG+e+
XP_013596368.1 180 GLEMGKASFPPEVSSDALFRCVKMSGVDEgGDGQYAYQTTVNIGGHLFKGILYDQGPES 238
*****************************8899************************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MAGMFSLGGN NGDQEEGNQQ QQKTNWVWYR SNTNTNNINP SSSVWQIPPE QQILMHHHQP 60
HPQQQSIDLD PGHQIDVSDI STSSRSITIS CRDCGNQAKK DCTHLRCRTC CKSRGFDCST 120
HVRSTWIPVA RRRERQQQLH MSTSGGGGRG GSGGSSIPKR HRDTTLPETS SSRLPSDSAG 180
LEMGKASFPP EVSSDALFRC VKMSGVDEGG DGQYAYQTTV NIGGHLFKGI LYDQGPESSY 240
MSGGSGGSDH HSSSAGGGNT SNTPAIADGG RGGSSAMFVD PNSGSYYSSN MMTMFVPPGT 300
QFYQNPPRS
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the apical parts of the developing gynoecium. In carpels, first observed at late development stage in the most apical parts of the open-ended gynoecium. Accumulates in differentiating style and stigmatic tissues. Not expressed in the stigma after fertilization but remains in the style until full silique maturation. Also detected in anthers. In seedlings, present in the shoot apex and in cotyledons, leaf primordia, stipules, hydathodes and in primordia of lateral roots. Detected in developing trichomes and in leaf and pedicel attachment sites. {ECO:0000269|PubMed:12361963}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, cauline leaves, flowers and siliques. {ECO:0000269|PubMed:12361963}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GU205265 | 0.0 | GU205265.1 Brassica rapa subsp. pekinensis stylish 2b (STY2b) mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT4G36260.1 | 1e-107 | Lateral root primordium (LRP) protein-related |
