PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013590576.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 332aa MW: 36840.6 Da PI: 7.8292

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013590576.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223.7	3.6e-69	103	268	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..........kskkqsal 86 r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C thvkstWvpa krrer +qla++++++a s++++++kr re +s ++ ++ XP_013590576.1 103 RQGSMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCRTHVKSTWVPAVKRRERLAQLASLQHRSAFSRETQKAKRLREAngggdnvdkdHSGSAGSA 197 7899*********************************************************99999999999988899999887767778889 PP DUF702 87 sstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 +t++++a+s++ +e+s+ lP+evss+avfrcvrvss+++ +++e+aYqtav+igGh+fkGiLydqG+e+ XP_013590576.1 198 IATRVPNANSNSGFEVSQnLPPEVSSPAVFRCVRVSSMEEdeDDQEYAYQTAVNIGGHIFKGILYDQGPEQ 268 99********99877***************88535567*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.7E-62	106	267	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.7E-27	108	150	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.0E-25	217	266	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MAGFFYLGGR DNNKQDLHQV DKSSYLYLYK DEIYNTNKGF EIWPPQYFQE QHQQQHVTAP 60 ANFYSFGMVP SGSSSNNNNN NRSRSLHFNV VSDHEPGGFT VTRQGSMNCQ DCGNQAKKDC 120 PHMRCRTCCK SRGFHCRTHV KSTWVPAVKR RERLAQLASL QHRSAFSRET QKAKRLREAN 180 GGGDNVDKDH SGSAGSAIAT RVPNANSNSG FEVSQNLPPE VSSPAVFRCV RVSSMEEDED 240 DQEYAYQTAV NIGGHIFKGI LYDQGPEQDH HHQLNLLAPT ATTTNAEETA AKTAVTVAGN 300 NNTGLILDPS SLYPVQLSSY ISGTPFFTPP RS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013590576.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU205267	0.0	GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013590576.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	0.0	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A0D3CWG3	0.0	A0A0D3CWG3_BRAOL; Uncharacterized protein
STRING	Bo6g086260.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-165	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]