 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_013589684.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
SRS |
| Protein Properties |
Length: 307aa MW: 33252.2 Da PI: 6.2723 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013589684.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 213.1 | 6.6e-66 | 89 | 237 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96
rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqq ++++s + ++ +kr+r+ + +ss + +s ++
XP_013589684.1 89 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQVHMSTSGG---SGSSVPKRHRDA---TLPGTSSFRSPSDSA 177
67899*************************************************99987665...468899999987...444455556677788 PP
DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeee..laYqtavsigGhvfkGiLydqGlee 154
e+ + +P+evss+a+f+cv++s+vdd+e++ +aYqt+v+igGh+fkGiLydqG+e+
XP_013589684.1 178 GLEMGEAIFPPEVSSDALFQCVKMSGVDDEEDDgqYAYQTTVNIGGHLFKGILYDQGPES 237
89999999********************9655334***********************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MAGMFSLGGN NNNNNGYEEE ETQQQQNTNW AWYRSNTNTN SINPSSSLWQ IPPEQQLLMH 60
HHQSQPQHQS LDLYPGHQID VCDVATSSRS ITISCRDCGN QAKKDCTHMR CRTCCKSRGF 120
DCSTHVRSTW IPVARRRERQ QQVHMSTSGG SGSSVPKRHR DATLPGTSSF RSPSDSAGLE 180
MGEAIFPPEV SSDALFQCVK MSGVDDEEDD GQYAYQTTVN IGGHLFKGIL YDQGPESSYV 240
SGGSGGSDHQ SSSAGGGNPI NTPAIAGGGG GSSTMFVDPN SSGYYSSNMA TMFVPPGTQF 300
YQNPPRS
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the apical parts of the developing gynoecium. In carpels, first observed at late development stage in the most apical parts of the open-ended gynoecium. Accumulates in differentiating style and stigmatic tissues. Not expressed in the stigma after fertilization but remains in the style until full silique maturation. Also detected in anthers. In seedlings, present in the shoot apex and in cotyledons, leaf primordia, stipules, hydathodes and in primordia of lateral roots. Detected in developing trichomes and in leaf and pedicel attachment sites. {ECO:0000269|PubMed:12361963}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, cauline leaves, flowers and siliques. {ECO:0000269|PubMed:12361963}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | GU205264 | 0.0 | GU205264.1 Brassica rapa subsp. pekinensis stylish 2a (STY2a) mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT4G36260.1 | 1e-113 | Lateral root primordium (LRP) protein-related |
