PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00152759001

Common Name

GSBRNA2T00152759001, LOC106409235

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 293aa MW: 34825 Da PI: 7.025

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00152759001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82	7.8e-26	39	121	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++Li++r e+++++ ++k++k lWe+vs+kmr + f rsp+qCk+kw+nl +r+k +++++++ +++++p++d+++ GSBRNA2T00152759001 39 QWSVEETKELIAIRGELDQTFMETKRNKLLWEDVSNKMRNKSFLRSPEQCKCKWKNLVTRFKGCETMDEEI---AKQQFPFYDDMH 121 7******************************************************************97...45579***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0012	36	98	IPR001005	SANT/Myb domain
CDD	cd12203	5.64E-22	38	103	No hit	No description
Pfam	PF13837	1.0E-20	39	121	No hit	No description
PROSITE profile	PS50090	7.654	40	96	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MDQHQLHQLH YLNKHHHQLH PQSQTPELAS PATGDRFPQW SVEETKELIA IRGELDQTFM 60 ETKRNKLLWE DVSNKMRNKS FLRSPEQCKC KWKNLVTRFK GCETMDEEIA KQQFPFYDDM 120 HIIFASRMQR MIWAESEGGG GTSGATRKRS QSEQFSSDEE EENVNEELVD ISNEPKTQNP 180 KKNIAKKRKG GISNSSGGAN NSVREVLDEF MRHQMRMENE WRERWEAREK ERAEKEEEWR 240 RKMEELEKDR MAMERMWRDR EEQRRSREDL RAEKRDSLIN ALLAKLTRDG SL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	5e-13	36	117	3	84	DNA binding protein GT-1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	188	PKKNIAKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269\|PubMed:15310827}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00152759001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269\|PubMed:15310827}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634279.1	0.0	PREDICTED: trihelix transcription factor GT-3b-like
Refseq	XP_013705349.1	0.0	trihelix transcription factor GT-3b
Swissprot	O80450	1e-119	TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBL	A0A0D3BQZ2	0.0	A0A0D3BQZ2_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6BT13	0.0	A0A3P6BT13_BRAOL; Uncharacterized protein
STRING	Bo4g029680.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2215	28	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	3e-96	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	106409235

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]