PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143720001
Common NameGSBRNA2T00143720001, LOC106356963
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 336aa    MW: 37220 Da    PI: 7.8389
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143720001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702222.96.5e-691062712154
               DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..........ksk 81 
                          r+g+++CqdCGnqakkdC h+RCRtCCk+rgf+C thvkstWvpaakrrer +qla++++++a s++++++kr re           +s 
  GSBRNA2T00143720001 106 RQGSMNCQDCGNQAKKDCPHMRCRTCCKTRGFHCRTHVKSTWVPAAKRRERLAQLASLQHRSAFSRETQKAKRLREAngggdnvdkdHSG 195
                          7899***********************************************************999999999999888999998877677 PP

               DUF702  82 kqsalsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                          ++ ++ +t++++a+s++ +e+s+ lP+evss+avfrcvrvss+++  +++e+aYqtav+igGh+fkGiLydqG+e+
  GSBRNA2T00143720001 196 SAGSAIATRVPNANSNSGFEVSQnLPPEVSSPAVFRCVRVSSMEEdeDDQEYAYQTAVNIGGHIFKGILYDQGPEQ 271
                          7888999************99877*******************88535567***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.1E-62109270IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.8E-26111153IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.0E-25220269IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAGFFYLGGR DNNKQDLHQV DKSSYLYLYK DEIYNTNKGF EIWPPQYFQE QHQQHQQQHV  60
TAPANFYSFG MVPSGSSSNN NNNNRSRSLH FNVVSDHEPG GFTVTRQGSM NCQDCGNQAK  120
KDCPHMRCRT CCKTRGFHCR THVKSTWVPA AKRRERLAQL ASLQHRSAFS RETQKAKRLR  180
EANGGGDNVD KDHSGSAGSA IATRVPNANS NSGFEVSQNL PPEVSSPAVF RCVRVSSMEE  240
DEDDQEYAYQ TAVNIGGHIF KGILYDQGPE QDHHHQLNLL APTATTTNAE ETAAKTAVTV  300
AGNNNTGLIL DPSSLYPVQL SSYISGTPFF TPPRS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.292011e-119bud
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143720001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052670.0GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652124.10.0protein SHI RELATED SEQUENCE 5
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A397YY320.0A0A397YY32_BRACM; Uncharacterized protein
TrEMBLM4CHR60.0M4CHR6_BRARP; Uncharacterized protein
STRINGBra003749.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-168SHI-related sequence 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]