PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00133568001
Common NameGSBRNA2T00133568001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 330aa    MW: 35601.7 Da    PI: 6.5003
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00133568001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.84e-07436436
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                         + C+ +++  + l+C+ +  +lC +C ++ H  
  GSBRNA2T00133568001  4 KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAA 36
                         68***************************9954 PP
2zf-B_box27.66.1e-094691342
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  GSBRNA2T00133568001 46 VWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
                         689*****************************66899999*99986 PP
3CCT70.25.3e-24261304144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  GSBRNA2T00133568001 261 REARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 304
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.2E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.438148IPR000315B-box-type zinc finger
PfamPF006432.7E-5443IPR000315B-box-type zinc finger
CDDcd000211.23E-8548No hitNo description
PROSITE profilePS5011910.8934491IPR000315B-box-type zinc finger
PfamPF006433.0E-74691IPR000315B-box-type zinc finger
CDDcd000211.42E-94791No hitNo description
SMARTSM003361.3E-104991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.767261303IPR010402CCT domain
PfamPF062036.2E-18261303IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSD SDGSAKHAAV NFLDDCYFSD  120
LDGNASREEE DEAASWLLPN PKTTTALAAA AEAVPGDSPE MNTGQQYLFP DLDLDYGTNR  180
TVKVAAVNEN CYELDFTGGS KGFTYGYNSI SHSQVSSSSL EVGVVPDGGS VADISYPYGG  240
AATSVTDPGT QRAVPLTAAE REARVMRYRE KRKNRKFEKT IRYASRKAYA EMRPRIKGRF  300
AKRTDTSESN DVVVGHGGIF SGFGLVPTF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.18831e-98flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00133568001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526611e-130AK352661.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013706149.10.0zinc finger protein CONSTANS-LIKE 4-like isoform X2
SwissprotQ940T90.0COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A3P5YJX50.0A0A3P5YJX5_BRACM; Uncharacterized protein
STRINGBra009805.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.10.0CONSTANS-like 4
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]