PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00124872001
Common NameGSBRNA2T00124872001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 295aa    MW: 34844.1 Da    PI: 7.1238
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00124872001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.74.9e-2644126186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W+ +e+++Li++r e+++++ ++k++k lWe vs+kmr++ f rsp+qCk+kw+nl +r+k +++++ +    +++++p++d+++
  GSBRNA2T00124872001  44 QWSLEETKELIAIRGELDQTFMETKRNKLLWEVVSNKMRDKSFLRSPEQCKCKWKNLVTRFKGCETMDAES---ARQQFPFYDDMD 126
                          7********************************************************************84...45689*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001841103IPR001005SANT/Myb domain
CDDcd122033.16E-2243108No hitNo description
PfamPF138371.8E-2044126No hitNo description
PROSITE profilePS500907.53845101IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDGHQHQLHH LQYLKKHSHH VHPQSQTPEI ASPATVAAGD RFPQWSLEET KELIAIRGEL  60
DQTFMETKRN KLLWEVVSNK MRDKSFLRSP EQCKCKWKNL VTRFKGCETM DAESARQQFP  120
FYDDMDIIFT SRMQRMIWVE SEGGGGGASG TTRKRSHSEQ FSSDEEEENV NEELVDISND  180
PKILNPKKNI GKKRKGGISN SNASNSVREV LDEFMRHHMR MENEWIERWE AREKERAERE  240
EEWRGKMEEI EKERVKMERM WRDREDQRRS REEMRAEKRD SLISALLAKL TRDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A2e-1341122384DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185194PKKNIGKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00124872001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4535820.0AF453582.1 Arabidopsis thaliana GT-1 like transcription factor (GT1L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133240.10.0PREDICTED: trihelix transcription factor GT-3b-like
RefseqXP_013740623.10.0trihelix transcription factor GT-3b-like
SwissprotO804501e-123TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A078F0350.0A0A078F035_BRANA; BnaA03g17660D protein
TrEMBLA0A397ZXI20.0A0A397ZXI2_BRACM; Uncharacterized protein
STRINGBra000046.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.14e-97Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]