PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00124424001

Common Name

GSBRNA2T00124424001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 353aa MW: 39988.5 Da PI: 5.3064

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00124424001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.6	1.1e-38	85	228	2	123
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssss 81 a+kkdrhskihT++g+RdRRvRls+ + ++fFdLqd+LGfdk+skt++WLl+++ +aikel++ +++ + + GSBRNA2T00124424001 85 AVKKDRHSKIHTAQGLRDRRVRLSIGISRQFFDLQDMLGFDKASKTLDWLLKKSRRAIKELVQEkklnnnvedfGNDGGNVV-------H 167 89**************************************************************554433333311111222.......1 PP TCP 82 asnsssg.....................kaaksaakskksqksaasalnlak.esrakararar 123 ++ + ++ + k+ +++k++++++n++ sraka+ +a+ GSBRNA2T00124424001 168 EED---DydddnvgdnsfvygsspysfeEEVLCEVKKAEKRKKKTEMSNISSkGSRAKAKGKAK 228 111...1122333455677888888886444555577778888888888887799999998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.0E-37	86	230	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	35.054	87	145	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MSSSNNGYNN GSNNGVYPLS LYLPSLSGQQ DIIRNPYNHQ LTASPGQMLS AVPESLMDYM 60 EFNSNNVMNQ QSFEIPEVSR EIKKAVKKDR HSKIHTAQGL RDRRVRLSIG ISRQFFDLQD 120 MLGFDKASKT LDWLLKKSRR AIKELVQEKK LNNNVEDFGN DGGNVVHEED DYDDDNVGDN 180 SFVYGSSPYS FEEEVLCEVK KAEKRKKKTE MSNISSKGSR AKAKGKAKGI TIDMTNDHPE 240 TASEIIQTEI MDPFKRSIIF NEGEEMTHSF YKESIQESDN HECITKTEVN LPMNMDQGYN 300 QHYGALMLKD QGSSSNYNAI LPQNFDCDYN PNPFIDQLFC GVTNTNFFRG IV*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MSSSNNGYNN GSNNGVYPLS LYLPSLSGQQ DIIRNPYNHQ LTASPGQMLS AVPESLMDYM  60
EFNSNNVMNQ QSFEIPEVSR EIKKAVKKDR HSKIHTAQGL RDRRVRLSIG ISRQFFDLQD  120
MLGFDKASKT LDWLLKKSRR AIKELVQEKK LNNNVEDFGN DGGNVVHEED DYDDDNVGDN  180
SFVYGSSPYS FEEEVLCEVK KAEKRKKKTE MSNISSKGSR AKAKGKAKGI TIDMTNDHPE  240
TASEIIQTEI MDPFKRSIIF NEGEEMTHSF YKESIQESDN HECITKTEVN LPMNMDQGYN  300
QHYGALMLKD QGSSSNYNAI LPQNFDCDYN PNPFIDQLFC GVTNTNFFRG IV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-14	92	145	1	54	Putative transcription factor PCF6
5zkt_B	2e-14	92	145	1	54	Putative transcription factor PCF6
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269\|PubMed:11470410}.
Uniprot	TISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269\|PubMed:11470410}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in petal morphogenesis. {ECO:0000269\|PubMed:17940055}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00124424001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013706058.1	0.0	transcription factor TCP1-like
Swissprot	Q9FYG7	1e-156	TCP1_ARATH; Transcription factor TCP1
TrEMBL	A0A078F2Y5	0.0	A0A078F2Y5_BRANA; BnaA07g25110D protein
STRING	Bra004097.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6733	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.1	1e-137	TCP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]