PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116900001
Common NameGSBRNA2T00116900001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 296aa    MW: 34985.2 Da    PI: 7.0251
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116900001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.11.6e-2539121186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W+ +e+++Li++r e+++++ ++k++k lWe vs+kmr++ f rsp+qCk+kw+nl +r+k +++++++    +++++p++d+++
  GSBRNA2T00116900001  39 QWSLEETKELIAIRGELDQTFMETKRNKLLWEVVSNKMRDKNFLRSPEQCKCKWKNLVTRFKGCETMDEEI---ARQQFPFYDDMQ 121
                          7********************************************************************97...45679*****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00223698IPR001005SANT/Myb domain
CDDcd122038.30E-2238103No hitNo description
PfamPF138372.6E-1939121No hitNo description
PROSITE profilePS500907.5384096IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDQHQLHQLH YLNKHHHQLH PQSQTPELAS PATGDRFPQW SLEETKELIA IRGELDQTFM  60
ETKRNKLLWE VVSNKMRDKN FLRSPEQCKC KWKNLVTRFK GCETMDEEIA RQQFPFYDDM  120
QIIFASRMQR MLWAESEGGG GGGGTSGATR KRSHSEQFSS DEEEENVNEE LVGISNESKT  180
LNPRKNIAKK RKGGISNSGG GANNSVREVL DEFMRHQMRM ENEWRERWEA REKERAEKEE  240
EWRRKMEELE KERMAMEQMW RDREEQRRSR EDMRAEKRDS LINSLLAKLT RDGSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A6e-1336117384DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182191PRKNIAKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116900001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013752201.10.0trihelix transcription factor GT-3b-like
SwissprotO804501e-119TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A3P5YQJ60.0A0A3P5YQJ6_BRACM; Uncharacterized protein
STRINGBo4g029680.11e-174(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.12e-96Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]