PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116452001
Common NameGSBRNA2T00116452001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 356aa    MW: 37355.4 Da    PI: 8.4962
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116452001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.11.9e-3953145288
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas.....ns 85 
                          +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  +++ +  ++     +s
  GSBRNA2T00116452001  53 PAAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNATLRGGGGstifaQS 142
                          5789*****************************************************************888422222222222222111 PP

                  TCP  86 ssg 88 
                          s++
  GSBRNA2T00116452001 143 SKS 145
                          111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-3459149IPR005333Transcription factor, TCP
PROSITE profilePS5136927.89259113IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDQNSHDRPT AEAGLQLNST ENPSPGRSVP FAGGATSSST STSSGTALAV VKPAAKKPSK  60
DRHTKVDGRG RRIRMPALCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI IASTGTGTIP  120
ANFSTLNATL RGGGGSTIFA QSSKSSPFHS TGMSLYEDTA QNAAVFGFHH QGYQPIMSAE  180
RNPPTLGKPY REDYFKESEP SGSSQKPGQF QEQEMGPGPG MGRGTANVVP QPMWAVAPGT  240
TNGGSAFWML PMSGSGGREQ MQQQPGHQMW AFNPGSYPVG TGRVVTAPMG SMMLGGQQLG  300
LGVAEGNMAA AMRGSRGGGG DGLAMTLDQH QHQHHQQHQE PNQSQASENG GDDKK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.106150.0flower| microspore-derived embryo| vegetative meristem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAPTransfer from AT1G72010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116452001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691643.10.0transcription factor TCP22-like
SwissprotQ9C7G41e-175TCP22_ARATH; Transcription factor TCP22
TrEMBLA0A398AAY80.0A0A398AAY8_BRACM; Uncharacterized protein
STRINGBra008001.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-140TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]