PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00110893001
Common NameGSBRNA2T00110893001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 421aa    MW: 48125.2 Da    PI: 6.91
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00110893001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.82.5e-22109210186
             trihelix   1 rWtkqevlaLiearremeerlr...rgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 
                          +Wt+ +v++Li a+ +++++ +                   +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +++ ++
  GSBRNA2T00110893001 109 KWTDTMVRLLIMAVFYIGDEAGglgG-DqtdgkkkisggilQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGRGtAC 197
                          7**************88888773331.13456678888999**********************************************459 PP

             trihelix  74 essstcpyfdqle 86 
                          +++++  +++ ++
  GSBRNA2T00110893001 198 RVVENQGLLEGMD 210
                          9999998888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-20107236No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MESNVMFSGF SPTTLSLETP QNPPNPVQFQ HPHPHPYTAA NDQQTHQQQQ QPMKQLYPYA  60
AKTKQLSPIS VGGGGEEDDR GSGSGSGCHP EDSAGTDGKR KISPWHRMKW TDTMVRLLIM  120
AVFYIGDEAG GLGGDQTDGK KKISGGILQK KGKWKSVSRA MVEKGFSVSP QQCEDKFNDL  180
NKRYKRVNDI LGRGTACRVV ENQGLLEGMD HLTPKLRDEV KKLLNSKHLF FKEMCAYHNS  240
CGHLDQNQIP VQSKPDHKGC FQMAMIVERE EEEGESDMAE DSETEIEDTD EEEEEEEETS  300
KKRRVSAAVK RMREETARVL DDPGKSAWEK KEWMRRKALE IEERKVGYEW EAVEMEKQRV  360
KWIRYRSKKE REMEKAKLEN QRRSLETERM VLILRRRDIE LTELQLAGKR VDPSSATGVR  420
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.65520.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00110893001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583548.10.0PREDICTED: uncharacterized protein LOC106292493
TrEMBLA0A0D3CLJ30.0A0A0D3CLJ3_BRAOL; Uncharacterized protein
STRINGBo5g137790.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-180sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]