PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00107670001

Common Name

GSBRNA2T00107670001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 2553aa MW: 288235 Da PI: 7.4803

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00107670001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	87.1	4.1e-27	211	303	10	89
TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 k++ k +g++RR R++a+caar+F+L+ eLG+++d++tieWLlqqa p+ ++tgt++++a+ + ++s +ss+s+ s++ GSBRNA2T00107670001 211 KRSRKDDGKGRRLRIPALCAARLFQLTGELGHKSDGETIEWLLQQAAPSLVAATGTGTIPANYSsLNVSLRSSGSTLSAPpssksvplyg 300 8999********************************************************987778888888888777763333344444 PP TCP 89 ..k 89 + GSBRNA2T00107670001 301 apA 303 331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	16.347	209	263	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.7E-25	219	324	IPR005333	Transcription factor, TCP
Pfam	PF00403	8.8E-6	353	394	IPR006121	Heavy metal-associated domain, HMA
PROSITE profile	PS51697	24.774	462	559	IPR006936	ALOG domain
Pfam	PF04852	1.1E-5	501	545	IPR006936	ALOG domain
SuperFamily	SSF52200	2.22E-7	587	688	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Pfam	PF01582	3.2E-7	602	698	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Pfam	PF00931	4.8E-20	721	965	IPR002182	NB-ARC
SuperFamily	SSF52540	9.68E-36	725	957	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	4.8E-4	734	868	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF46785	1.71E-5	933	1037	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:3.40.50.300	5.3E-10	985	1036	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52058	1.39E-29	1055	1299	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	9.5E-26	1062	1307	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF07725	2.1E-9	1122	1141	IPR011713	Leucine-rich repeat 3
PROSITE profile	PS51450	4.686	1192	1214	IPR001611	Leucine-rich repeat
PROSITE profile	PS51450	4.793	1215	1235	IPR001611	Leucine-rich repeat
PROSITE profile	PS51450	5.448	1236	1258	IPR001611	Leucine-rich repeat
PROSITE profile	PS51450	4.508	1259	1281	IPR001611	Leucine-rich repeat
SuperFamily	SSF52200	1.01E-34	1370	1521	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Gene3D	G3DSA:3.40.50.10140	1.3E-19	1377	1493	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profile	PS50104	23.145	1379	1518	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Pfam	PF01582	4.4E-41	1380	1547	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SMART	SM00255	6.7E-49	1380	1518	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52540	8.69E-48	1547	1803	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	1.0E-25	1564	1810	IPR002182	NB-ARC
Gene3D	G3DSA:3.40.50.300	1.3E-7	1575	1697	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00364	6.9E-17	1579	1594	No hit	No description
PRINTS	PR00364	6.9E-17	1651	1665	No hit	No description
PRINTS	PR00364	6.9E-17	1744	1758	No hit	No description
SuperFamily	SSF52058	2.55E-42	1815	1830	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	3.2E-24	1873	2155	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52058	2.55E-42	1880	2239	IPR032675	Leucine-rich repeat domain, L domain-like
PROSITE profile	PS51450	5.171	1963	1985	IPR001611	Leucine-rich repeat
PROSITE profile	PS51450	4.555	2010	2032	IPR001611	Leucine-rich repeat
PRINTS	PR00364	6.9E-17	2029	2045	No hit	No description
PROSITE profile	PS51450	4.886	2077	2100	IPR001611	Leucine-rich repeat
PROSITE profile	PS51450	5.202	2101	2123	IPR001611	Leucine-rich repeat
Gene3D	G3DSA:3.80.10.10	4.1E-9	2173	2246	IPR032675	Leucine-rich repeat domain, L domain-like
PROSITE profile	PS51450	5.379	2174	2195	IPR001611	Leucine-rich repeat
PROSITE profile	PS51450	7.211	2197	2218	IPR001611	Leucine-rich repeat
PROSITE profile	PS51450	4.739	2220	2242	IPR001611	Leucine-rich repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007165	Biological Process	signal transduction
GO:0030001	Biological Process	metal ion transport
GO:0005515	Molecular Function	protein binding
GO:0043531	Molecular Function	ADP binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2553 aa Download sequence Send to blast
MSAPGKSDYS SGGPDRPLYR SNLASQMARS SSFRETMEQP VSSSHASMLR TTSPLAQTDV 60 TNFFQCLRFD PKVVAADHKS VRQGDFKRHV NIGLGIQGDE SPSTTPRGKL TPSPIPEEIK 120 RLKAGLRENI VKARERVIIF NEASSVFNKV FPTVPTKKRS RPEGFSVARE GSPHLVYPFL 180 KIVPKSAPPE YATLATTSSS PAAATSGVIT KRSRKDDGKG RRLRIPALCA ARLFQLTGEL 240 GHKSDGETIE WLLQQAAPSL VAATGTGTIP ANYSSLNVSL RSSGSTLSAP PSSKSVPLYG 300 APAASGDHTP PLSGFQRPSS LISEVTKEPG PEKSSKNKLV LELDISGDKS MQKKVMKKLA 360 ALSGINYISL DPETGTLTIK GDIELNTVLE KVERYCSCKR VKVSGEPAMM AEPKKMYKRG 420 VSQGRVSMGK ALTSEQSLRS TAGSGDSCSG INIPGKSIIT PPNVRNLDAD WYSFCDFLDQ 480 RMRPLTLSGC TAKDAIDFLR MRQTSGNAEA LVGRLSAACE AYGITPKENP FRSLAVISYV 540 KETREITREA DYVLVFSCND NLDEDETHLI EAISKELHER EVAPLTYNLS QRENLDGDML 600 YRSSVGLMVV SSSLAYSSQS LDHLAAIMEF CKAKHLVIIP VYLKVTPSDI CGWEDRFEQV 660 LPSYLNSIQP DRIQKWKAAL TDVASIDGHQ WSEGSQFMLA KKVVRNACFR LHLKSSKNLV 720 RILALLNHPQ PLEAEIEGIW GMAGIGKTSI AREIFELLAP QYDLCYFLQD FHRMCKSKGL 780 RQIRDDFLSK VFREEELCLG ACDTKPSFMR DWFQNREILV VLDDVSNARD AEYVFGGFSW 840 FSRGHRIILT SRSKQVLVQC KVKEPYEIQK LSDFESLRLC KQYLKEESAI MSELMSCSSG 900 IPLALKSFVS SVSKQHMNDM KKHLQSLRIN PPTKIQEAFR RSFDGLDENG KNIFLDLACF 960 FRGENKEHVV QLLDACGFFT YLGICDLIDE SLISLLDNKI EIPIPFQDIG RFIVREEDMD 1020 PCERSRLWDS NDIIDVLTNN SGTEAIEGIF LDASDLTCEL SPTVFSNMYR LRLLKFYCSN 1080 TSGNQCKLSL PQGLDTLPDE LRLLHWEHYP LGYLPQKFSP ENLVEINMPY SNIEKLWEGK 1140 KNLEKLKKIK LSHSRKLTDV LTLSEAMNLE HIDFEGCTSM IDVSTSITHL GKLVSLNMKD 1200 CCHLRSLPSM VDLTSLKLLN LSGCSELEDI QDFSPNLEGL YLAGTAIREL PFSVENLTEL 1260 STLDLENCVR LQKLPSGVRN SRSIVNLKLS GCTILELGKR KRLLALQASY ASILVARALY 1320 KETLFYVGFL LDMSFVVPQE RIGLGFNLTG TLLPNEFNGS ESPSFPNRIM ASASSSSKRQ 1380 FDVFVSFRGA DTRTNFTSYL RQSLHRKGID TFFDEKLRRG QDLSVLFDRI EQSKMSIVVF 1440 SENYANSTWC LEELWKIMQC REKRGHGVIP IFYKVKKFDV ENQKGSFEAP FKNPKECLKG 1500 DGQKVGAWKE ALRAASNILG FVLPEERPES EFVEKIAKET FRMLNDLSPC EISGFPGIES 1560 RSKKLEELLM FDNANCVRAI GVLGMTGIGK TKVADSVYKR NHRQFDGYYF LEDVDKELEW 1620 HTLSYLREKL LCKLLDEEDL DVRALGRLED FLRNKKVFIV LDNVTKENQI KDLIGPLEQY 1680 RKGSRIVITT RDKKLLQNNT DATYLVPRLN DWEAMELFSI GAFPENLYPP EEFLDLSNKF 1740 VYYAKGHPSA LKLLGSGLCK KEKTYWMEKW ERLRVMPDKE IQKELKRSYE ELDDEQRSIF 1800 LDIACFFRSE KADFMHDLMH AMGKEIGSES SIRRAGKRSR LWNHKDIRHV LEQRTGTECV 1860 RGIFFNMSNV EKIKLSPDVF IRMSNLKFLK FHNSHCSQWC DNDHKFQFCE GLDHFPDELV 1920 YLHWQGYPYN CLPSEFNPEE LVDLNLRYSH IKQPWETEKN TENLRWVDLS HSKGLLNLSG 1980 LSKAKNLERL DLEGCTSLAA LGSSIEQMNK LIYLNLRECT SLECLPEGIN LKSLKTLILS 2040 GCSNLQKFQI ISENIESLYL EGSAIKQVVE HIESLCNLIL LNLKNCRRLK SLPNDLYKLK 2100 SLQELILSGC SALESLPPIN EEMECLEILL MDGTSIRQTP EMICLSNLKL FSFCGSSIKG 2160 STWLVLLPFS GNSCLWDLYL TNCNIYKLPD NFSSLRSLRC LCLSRNDIET LPESIEKLYS 2220 LLLLDLKHCR NLNSLPVLPP NLQYVDAHGC VSLEKVAKPV TLPLVTERMH TTFIFTDCFK 2280 LNRAEQESIV DQAQLKSQLL ARTSLQHNHK GPVTDPLVAV CFPGSDIPSW LCNQRMGSSI 2340 ETDLVSHWCN SKFIGVSLCV VVSFEGHESC YANGLSVRCK CEFKNQNGQS ISFSFCLGGW 2400 NESCGSSCHE PRKLGSDHVF ISYNKFKVPV YRWSEESNEG NRCRPTSASF EFYLTDDTER 2460 KLESCKVTRC GMSLLYDPDE NDRGFQGTRV TDIVERTSSE AFVPVKGLSL SQVGARRNGI 2520 IRDEIPMNLK TLQFRPFGFV KGRVLSKYLA EV*

Sequence ? help Back to Top

Protein Sequence Length: 2553 aa Download sequence Send to blast

MSAPGKSDYS SGGPDRPLYR SNLASQMARS SSFRETMEQP VSSSHASMLR TTSPLAQTDV  60
TNFFQCLRFD PKVVAADHKS VRQGDFKRHV NIGLGIQGDE SPSTTPRGKL TPSPIPEEIK  120
RLKAGLRENI VKARERVIIF NEASSVFNKV FPTVPTKKRS RPEGFSVARE GSPHLVYPFL  180
KIVPKSAPPE YATLATTSSS PAAATSGVIT KRSRKDDGKG RRLRIPALCA ARLFQLTGEL  240
GHKSDGETIE WLLQQAAPSL VAATGTGTIP ANYSSLNVSL RSSGSTLSAP PSSKSVPLYG  300
APAASGDHTP PLSGFQRPSS LISEVTKEPG PEKSSKNKLV LELDISGDKS MQKKVMKKLA  360
ALSGINYISL DPETGTLTIK GDIELNTVLE KVERYCSCKR VKVSGEPAMM AEPKKMYKRG  420
VSQGRVSMGK ALTSEQSLRS TAGSGDSCSG INIPGKSIIT PPNVRNLDAD WYSFCDFLDQ  480
RMRPLTLSGC TAKDAIDFLR MRQTSGNAEA LVGRLSAACE AYGITPKENP FRSLAVISYV  540
KETREITREA DYVLVFSCND NLDEDETHLI EAISKELHER EVAPLTYNLS QRENLDGDML  600
YRSSVGLMVV SSSLAYSSQS LDHLAAIMEF CKAKHLVIIP VYLKVTPSDI CGWEDRFEQV  660
LPSYLNSIQP DRIQKWKAAL TDVASIDGHQ WSEGSQFMLA KKVVRNACFR LHLKSSKNLV  720
RILALLNHPQ PLEAEIEGIW GMAGIGKTSI AREIFELLAP QYDLCYFLQD FHRMCKSKGL  780
RQIRDDFLSK VFREEELCLG ACDTKPSFMR DWFQNREILV VLDDVSNARD AEYVFGGFSW  840
FSRGHRIILT SRSKQVLVQC KVKEPYEIQK LSDFESLRLC KQYLKEESAI MSELMSCSSG  900
IPLALKSFVS SVSKQHMNDM KKHLQSLRIN PPTKIQEAFR RSFDGLDENG KNIFLDLACF  960
FRGENKEHVV QLLDACGFFT YLGICDLIDE SLISLLDNKI EIPIPFQDIG RFIVREEDMD  1020
PCERSRLWDS NDIIDVLTNN SGTEAIEGIF LDASDLTCEL SPTVFSNMYR LRLLKFYCSN  1080
TSGNQCKLSL PQGLDTLPDE LRLLHWEHYP LGYLPQKFSP ENLVEINMPY SNIEKLWEGK  1140
KNLEKLKKIK LSHSRKLTDV LTLSEAMNLE HIDFEGCTSM IDVSTSITHL GKLVSLNMKD  1200
CCHLRSLPSM VDLTSLKLLN LSGCSELEDI QDFSPNLEGL YLAGTAIREL PFSVENLTEL  1260
STLDLENCVR LQKLPSGVRN SRSIVNLKLS GCTILELGKR KRLLALQASY ASILVARALY  1320
KETLFYVGFL LDMSFVVPQE RIGLGFNLTG TLLPNEFNGS ESPSFPNRIM ASASSSSKRQ  1380
FDVFVSFRGA DTRTNFTSYL RQSLHRKGID TFFDEKLRRG QDLSVLFDRI EQSKMSIVVF  1440
SENYANSTWC LEELWKIMQC REKRGHGVIP IFYKVKKFDV ENQKGSFEAP FKNPKECLKG  1500
DGQKVGAWKE ALRAASNILG FVLPEERPES EFVEKIAKET FRMLNDLSPC EISGFPGIES  1560
RSKKLEELLM FDNANCVRAI GVLGMTGIGK TKVADSVYKR NHRQFDGYYF LEDVDKELEW  1620
HTLSYLREKL LCKLLDEEDL DVRALGRLED FLRNKKVFIV LDNVTKENQI KDLIGPLEQY  1680
RKGSRIVITT RDKKLLQNNT DATYLVPRLN DWEAMELFSI GAFPENLYPP EEFLDLSNKF  1740
VYYAKGHPSA LKLLGSGLCK KEKTYWMEKW ERLRVMPDKE IQKELKRSYE ELDDEQRSIF  1800
LDIACFFRSE KADFMHDLMH AMGKEIGSES SIRRAGKRSR LWNHKDIRHV LEQRTGTECV  1860
RGIFFNMSNV EKIKLSPDVF IRMSNLKFLK FHNSHCSQWC DNDHKFQFCE GLDHFPDELV  1920
YLHWQGYPYN CLPSEFNPEE LVDLNLRYSH IKQPWETEKN TENLRWVDLS HSKGLLNLSG  1980
LSKAKNLERL DLEGCTSLAA LGSSIEQMNK LIYLNLRECT SLECLPEGIN LKSLKTLILS  2040
GCSNLQKFQI ISENIESLYL EGSAIKQVVE HIESLCNLIL LNLKNCRRLK SLPNDLYKLK  2100
SLQELILSGC SALESLPPIN EEMECLEILL MDGTSIRQTP EMICLSNLKL FSFCGSSIKG  2160
STWLVLLPFS GNSCLWDLYL TNCNIYKLPD NFSSLRSLRC LCLSRNDIET LPESIEKLYS  2220
LLLLDLKHCR NLNSLPVLPP NLQYVDAHGC VSLEKVAKPV TLPLVTERMH TTFIFTDCFK  2280
LNRAEQESIV DQAQLKSQLL ARTSLQHNHK GPVTDPLVAV CFPGSDIPSW LCNQRMGSSI  2340
ETDLVSHWCN SKFIGVSLCV VVSFEGHESC YANGLSVRCK CEFKNQNGQS ISFSFCLGGW  2400
NESCGSSCHE PRKLGSDHVF ISYNKFKVPV YRWSEESNEG NRCRPTSASF EFYLTDDTER  2460
KLESCKVTRC GMSLLYDPDE NDRGFQGTRV TDIVERTSSE AFVPVKGLSL SQVGARRNGI  2520
IRDEIPMNLK TLQFRPFGFV KGRVLSKYLA EV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ku7_A	2e-40	1374	1544	1	169	TIR-NB-LRR type resistance protein RPV1
5ku7_B	2e-40	1374	1544	1	169	TIR-NB-LRR type resistance protein RPV1
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Functional Description ? help Back to Top
Source	Description
UniProt	Disease resistance protein that cooperates with RPP2A to confer resistance to Hyaloperonospora parasitica isolate Cala2. {ECO:0000269\|PubMed:15165183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00107670001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013672702.1	0.0	probable WRKY transcription factor 19 isoform X2
Refseq	XP_013672703.1	0.0	probable WRKY transcription factor 19 isoform X1
Swissprot	F4JT80	0.0	RPP2B_ARATH; Disease resistance protein RPP2B
TrEMBL	A0A0D3A4E2	0.0	A0A0D3A4E2_BRAOL; Uncharacterized protein
STRING	Bo1g021620.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.1	1e-128	WRKY family protein

Publications ? help Back to Top
Sinapidou E, et al. Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis. Plant J., 2004. 38(6): p. 898-909 [PMID:15165183] Nieto C, et al. An eIF4E allele confers resistance to an uncapped and non-polyadenylated RNA virus in melon. Plant J., 2006. 48(3): p. 452-62 [PMID:17026540] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]