PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00105430001

Common Name

GSBRNA2T00105430001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 263aa MW: 29963.2 Da PI: 8.1112

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00105430001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.6	1.1e-13	72	124	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +r++h e+Er+RR+++ s f Lr +lP ++K s ++ + +Av+YIk+L+ GSBRNA2T00105430001 72 KRVKHREIERQRRQEVTSLFKHLRYILPVqY---VKGKRSSSDHVHEAVNYIKDLE 124 79*************************66...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.90E-9	69	128	No hit	No description
SuperFamily	SSF47459	9.29E-15	70	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.16	71	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-11	72	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-11	72	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MAFPSSSSFT VDFAYENELD FSSLLTPSTL ISFQDPNPTN PIIHTENDGR QRIRDTTVTD 60 EIPKEDVEPK NKRVKHREIE RQRRQEVTSL FKHLRYILPV QYVKGKRSSS DHVHEAVNYI 120 KDLEKKIKEV SEKRDRFKRS ITHPPPAGYC PIRSLAASCS SSSLSSYCSC VGDTHIDVKV 180 RTCLVGIEIV VSCCFRHESC LSRVLQLLVQ EQSFNVVSCI STRLHLRIIH TIVSEVEKGI 240 EINFSELQEK IIKNMGTSCF NF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	83	KRVKHREIERQRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00105430001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA). {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013746565.2	0.0	transcription factor bHLH55
Swissprot	Q9LN95	1e-124	BH055_ARATH; Transcription factor bHLH55
TrEMBL	A0A397YXV0	0.0	A0A397YXV0_BRACM; Uncharacterized protein
STRING	Bra019773.1-P	1e-168	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6228	18	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12540.1	1e-119	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Wisman E, et al. Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes. Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7 [PMID:9770503]