PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00103257001

Common Name

GSBRNA2T00103257001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 335aa MW: 34905.6 Da PI: 6.6809

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00103257001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.6	4.5e-38	44	139	5	89
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas...nsssg.. 88 k++ +++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ ++s + ++ + + GSBRNA2T00103257001 44 KKPCKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNASLRGGGGgfaQ---Ssk 130 7899**************************************************************888433333222222221...111 PP TCP 89 ........k 89 + GSBRNA2T00103257001 131 ssslpmsfH 139 223333331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	26.73	47	101	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	8.8E-35	48	151	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
METRTVEEAS LQLNSTENPS PGGGSVPTTS SNTAALAVVK SAVKKPCKDR HTKVDGRGRR 60 IRMPAVCAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA TTGTGTIPAN FSTLNASLRG 120 GGGGFAQSSK SSSLPMSFHG SGMSLYDDSN GSNGSSSSAV VDHSRKLEDY FKESDEVTGG 180 SSQKPGQFQD QELGPGMGRE TPTASVVPQP MWAVAPGSTN GGSAFWMLPM SGSGGREQMQ 240 QQQPGHQMWA FNPGSYPVGT GRVVTAAPMG SMMLGGQQLG LGVAEGNMAA ALRGGRGGDG 300 LGMTLEQHQH QHHQQHQEPN NQGEASENGG DDKK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.7936	0.0	flower\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00103257001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013592228.1	0.0	PREDICTED: transcription factor TCP22-like
Swissprot	Q9C7G4	1e-144	TCP22_ARATH; Transcription factor TCP22
TrEMBL	A0A0D3D006	0.0	A0A0D3D006_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6GYA0	0.0	A0A3P6GYA0_BRAOL; Uncharacterized protein
STRING	Bo6g114530.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7053	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	3e-76	TCP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Dong H, et al. Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis. Genes Dev., 2017. 31(2): p. 197-208 [PMID:28167503]