PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00102522001

Common Name

GSBRNA2T00102522001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 336aa MW: 34794.4 Da PI: 7.0894

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00102522001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.6	1.1e-38	38	127	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ ++s + ++ g GSBRNA2T00102522001 38 VKKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNASLRGGGGGG--Gstvf 125 5899**************************************************************98884333333333322..12344 PP TCP 89 .k 89 + GSBRNA2T00102522001 126 aQ 127 31 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-34	42	139	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.489	42	96	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
METRTAEEAS LQLNSTENPS PGGGSVPSTA LAVVKSAVKK PSKDRHTKVD GRGRRIRMPA 60 VCAARVFQLT RELGHKSDGE TIEWLLQQAE PAIIATTGTG TIPANFSTLN ASLRGGGGGG 120 GSTVFAQSSK SSSLPMSFHG SGMSLYDDSN GANGSSSSVV VDHSRKEDYF NKESEVPSGS 180 SQKPGQFQDQ ELGPGPGMGR GTPTASVVPQ PMWAVAPGST NGGSAFWMLP MSGSGGREQM 240 QQQQPGHQMW AFNPGSYPVG TGRVVTAAPM GSMMLGGQQL GLGVAEGNMA AALRGGRGGD 300 GLGMTLEQHQ HQHHQQHQEP NNQGEASENG GDDKK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.7936	0.0	flower\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00102522001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105865.1	0.0	PREDICTED: transcription factor TCP22-like
Swissprot	Q9C7G4	1e-141	TCP22_ARATH; Transcription factor TCP22
TrEMBL	A0A3P6B6Q2	0.0	A0A3P6B6Q2_BRACM; Uncharacterized protein
STRING	Bra016090.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7053	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	3e-76	TCP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Dong H, et al. Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis. Genes Dev., 2017. 31(2): p. 197-208 [PMID:28167503]