PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098309001
Common NameGSBRNA2T00098309001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 378aa    MW: 42458.6 Da    PI: 6.0657
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098309001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.99.9e-091357341
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         +r C+ + + +++++C  ++ +lC++C +  H+       H++v 
  GSBRNA2T00098309001 13 ARACDSCVKRRARWYCAADDAFLCQSCDTLVHSAnllarrHERVL 57
                         578*****************************6688888898875 PP
2CCT68.32.1e-23319362144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  GSBRNA2T00098309001 319 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 362
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.9E-101158IPR000315B-box-type zinc finger
PROSITE profilePS5011910.4661158IPR000315B-box-type zinc finger
PfamPF006431.1E-71357IPR000315B-box-type zinc finger
CDDcd000212.62E-91458No hitNo description
PfamPF062036.0E-18319361IPR010402CCT domain
PROSITE profilePS5101716.083319361IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MKSLASAVGA KTARACDSCV KRRARWYCAA DDAFLCQSCD TLVHSANLLA RRHERVLLKS  60
ASKHSNHNHN HSPSSPPHEA ATWHHGFTRK PRTPRGSGKK NNLSIFHDLV PEISVEDQTE  120
SCELEEQLIC QVPVLDPTVA EQILNDVVEA KIEFPIMRSG VMMDDQEDED NAESCLNGFF  180
PTDMELEEYA ADVETLLDMN IGICDDDRDA TAPFELSFDY ESHNTYEEEV IKNIEGSGEC  240
VKVKEEEQKN VLMLRLNYDS VISTWGGQGP PWTSGEPPER DIDISSWPFV SMGGNVRESQ  300
QKHHVGVCLP SSGFGDGGRE ARVSRYREKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK  360
RASLAVSAMN SPLGVNY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329345RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.40540.0bud| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098309001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894760.0AC189476.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB080N15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013711556.10.0zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD00.0COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A078IPV30.0A0A078IPV3_BRANA; BnaA07g37160D protein
STRINGBra012475.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]