PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00089915001
Common NameGSBRNA2T00089915001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 290aa    MW: 32151.3 Da    PI: 7.2707
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00089915001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.49.5e-06546237
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                         e + C+ ++e  + lfC+ +   lC  C ++ H        H
  GSBRNA2T00089915001  5 ERHPCEFCGERAAVLFCRADTAKLCLPCDQHVHTAnllskkH 46
                         6789******99******************999444555555 PP
2zf-B_box23.21.4e-074980334
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                          ++C+++++++++  C++++  lC+dC    H
  GSBRNA2T00089915001 49 SQICDNCGNEPVSVRCFTDNLVLCQDCDWDVH 80
                         689************************98777 PP
3CCT62.81.1e-21240284144
                  CCT   1 ReaallRYkeKrktR.kFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R++a++RYkeKrktR +++K+irYesRKa+A++R RvKGrFvk++
  GSBRNA2T00089915001 240 RDNAMQRYKEKRKTRsRYDKTIRYESRKATADTRLRVKGRFVKAT 284
                          899************67**************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.8E-11451IPR000315B-box-type zinc finger
PROSITE profilePS501199.2451IPR000315B-box-type zinc finger
CDDcd000212.00E-7851No hitNo description
PROSITE profilePS501198.7174794IPR000315B-box-type zinc finger
PfamPF006432.5E-54980IPR000315B-box-type zinc finger
CDDcd000217.19E-85180No hitNo description
SMARTSM003360.455294IPR000315B-box-type zinc finger
PfamPF062034.8E-17240283IPR010402CCT domain
PROSITE profilePS5101712.54240283IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSSSERHPCE FCGERAAVLF CRADTAKLCL PCDQHVHTAN LLSKKHVRSQ ICDNCGNEPV  60
SVRCFTDNLV LCQDCDWDVH GSCSVSDAHV RSALEGFSGC PSALELAALL GVDLGGRKEE  120
NEGPTMESFG MQLDSWVTGS NVLQELVVPV PKETTSFRKR GSSCCGRYKQ VLCKQLEEEG  180
LMVPEMPERM GRARDAEEIN SGGEVIQQPP TTSFTSLLLN ADNPSASSAG RTTQIWDFNR  240
DNAMQRYKEK RKTRSRYDKT IRYESRKATA DTRLRVKGRF VKATEAPYP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00089915001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891941e-114AC189194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003O07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102939.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15-like
RefseqXP_013653237.10.0zinc finger protein CONSTANS-LIKE 15-like
SwissprotQ9C7E81e-106COL15_ARATH; Zinc finger protein CONSTANS-LIKE 15
TrEMBLA0A078FRD40.0A0A078FRD4_BRANA; BnaA07g08670D protein
STRINGBra030070.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-108B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]