PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00086514001

Common Name

GSBRNA2T00086514001, LOC106380109

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 302aa MW: 33732.1 Da PI: 6.7228

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00086514001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.2	7.3e-31	61	166	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak ++el+ + GSBRNA2T00086514001 61 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQVYDLQDRLGLSQPSKVIDWLLEAAKDDVDELPPLqfpqgfnqmypslifgessstsaastf 150 78*************************************************************555555444444444433322222222 PP TCP 66 ..ssssaseceaesssssasnsssg...........k 89 + + + GSBRNA2T00086514001 151 pgT---------------------NlgfleswdlggS 166 220.....................1333433334331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	30.424	62	120	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	9.6E-30	62	194	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MRSRDCDEDE IQANQEGDHN HQLNLNSMFQ PQNQPSSVPT SRQWTSAFRN PRIVRVSRTF 60 GGKDRHSKVC TVRGLRDRRI RLSVPTAIQV YDLQDRLGLS QPSKVIDWLL EAAKDDVDEL 120 PPLQFPQGFN QMYPSLIFGE SSSTSAASTF PGTNLGFLES WDLGGSSSRT RTRIADTTTT 180 PRESFDLDKG KWIKQDENSN HQDHGFDISH QNFSLTNPYN NNSTSSYYNL GHLQNSLDQS 240 GNNVTVAIPN VPYNNNLNLP PPPTMSSLFP MYPSFLGASH QVVDGAGNLQ LFSSNANRNN 300 R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-18	67	121	1	55	Putative transcription factor PCF6
5zkt_B	4e-18	67	121	1	55	Putative transcription factor PCF6
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269\|PubMed:25378179}.
Uniprot	TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques. {ECO:0000269\|PubMed:17307931}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00086514001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013675381.1	0.0	transcription factor TCP5
Swissprot	Q9FME3	1e-146	TCP5_ARATH; Transcription factor TCP5
TrEMBL	A0A078I7W6	0.0	A0A078I7W6_BRANA; BnaC02g41900D protein
STRING	Bo2g161240.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	1e-122	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Link Out ? help Back to Top
Entrez Gene	106380109

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]