PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00083170001
Common NameGSBRNA2T00083170001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 347aa    MW: 39429.7 Da    PI: 5.306
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00083170001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.15.5e-37842192125
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec...eaesssssasns 85 
                          a+kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+s+t++WLl+++ + i el++    +   +++    ++  ++++++ +
  GSBRNA2T00083170001  84 AVKKDRHSKIHTAQGLRDRRVRLSIGVARQFFDLQDMLGFDKASETLDWLLKKSRRGINELVQEkklN---NKDEdfrNNRGDVEEDEDD 170
                          89**************************************************************5552...3222222222222222211 PP

                  TCP  86 ssg.........kaaksaa.kskksqksaasalnlakesrakarararer 125
                          + +         +++++   + kk++ks+ s   l+++ r k+++  re 
  GSBRNA2T00083170001 171 G-DksfvygsspDSCEEVVyEVKKTEKSNISSKGLMDKARGKSKQITREM 219
                          1.134566666666666665666666666666666666666666666654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.1E-3585217IPR005333Transcription factor, TCP
PROSITE profilePS5136934.03986144IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSSSNNDYNN GNSGVYPLSL YLSSLPGHQG IIRNPYNHQS TASLGQMVSA VPESLIDYMS  60
FNSNSAVNQK GYEIPEVSRE IKKAVKKDRH SKIHTAQGLR DRRVRLSIGV ARQFFDLQDM  120
LGFDKASETL DWLLKKSRRG INELVQEKKL NNKDEDFRNN RGDVEEDEDD GDKSFVYGSS  180
PDSCEEVVYE VKKTEKSNIS SKGLMDKARG KSKQITREMT YDHPEAVSEI TQTEIMDPFK  240
MSIIFNEGDD MTHSFYKEAI QEFDNQECIL TKTNVNLPTD MDRSYNQHYG TCMSKNQGSS  300
SNYNTILPQN LDYGYDQNPF MDQPFCAVTN RNFPRGKVWV QDSSLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-1491144154Putative transcription factor PCF6
5zkt_B7e-1491144154Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269|PubMed:11470410}.
UniprotTISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269|PubMed:11470410}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00083170001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892000.0AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619496.10.0PREDICTED: transcription factor TCP1-like
SwissprotQ9FYG71e-159TCP1_ARATH; Transcription factor TCP1
TrEMBLA0A078I7I40.0A0A078I7I4_BRANA; BnaC02g17320D protein
TrEMBLA0A3P6DFL50.0A0A3P6DFL5_BRAOL; Uncharacterized protein
STRINGBo2g055640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.11e-149TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]