PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00082802001

Common Name

GSBRNA2T00082802001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 333aa MW: 37886.4 Da PI: 9.0435

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00082802001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	137.2	1.4e-42	101	222	3	133
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 +k+drhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k++ik+ ++ + s ++e+ ++s++ + GSBRNA2T00082802001 101 KKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLISKSKASIKQVKESAAASG---NHEHLQVSDN------VND 181 699**********************************************************55554...2222233222......112 PP TCP 93 saakskksqksaasalnlakesrakarararertrekmrik 133 +++k +k +++ + ++k+sr+kar+rarert km+++ GSBRNA2T00082802001 182 ETQKVSKGRTKRVDDSCKKKQSREKARERARERTMTKMKMR 222 22244444444444467888*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.2E-35	101	221	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	35.387	102	160	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.417	201	218	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MFPSIDTNGY DLFDPFNLHE ATMLPSFTTH ILSPSSHHHY PFPSSSDFLD ESVLISQFLL 60 QQQADVDSPR KLRRELEQEK KNEEWVDGTT SEKVSPRRTG KKRDRHSKIC TAQGPRDRRM 120 RLSLQIARKF FDLQDMLGFD KASKTIEWLI SKSKASIKQV KESAAASGNH EHLQVSDNVN 180 DETQKVSKGR TKRVDDSCKK KQSREKARER ARERTMTKMK MRLSGLIDTS KTFADPNQVS 240 RKTKIIGGAQ ERENLEQERS IIEKFLGLTS ESSSSTIFGD SEESYTSLGS IRETVSTTGM 300 VIPREHNTTS TASVDEERNP ISTFSLYDYL CY*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269\|PubMed:17307924}.
Uniprot	TISSUE SPECIFICITY: Expressed in axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269\|PubMed:17307924}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269\|PubMed:17307924}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00082802001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269\|PubMed:17307924}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009127671.1	0.0	PREDICTED: transcription factor TCP12
Swissprot	A0AQW4	1e-130	TCP12_ARATH; Transcription factor TCP12
TrEMBL	A0A078I6V2	0.0	A0A078I6V2_BRANA; BnaA02g14010D protein
TrEMBL	A0A3P6ARM2	0.0	A0A3P6ARM2_BRACM; Uncharacterized protein
STRING	Bra038350.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11632	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-120	TCP domain protein 12

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]