PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082326001
Common NameGSBRNA2T00082326001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 290aa    MW: 31540.6 Da    PI: 7.8677
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082326001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.43.4e-09447441
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         r C+ + +  ++lfC+ +  +lC +C  ++H        H++v 
  GSBRNA2T00082326001  4 RPCDSCRSAAATLFCRADAAFLCGECDGKIHTAnklasrHERVL 47
                         68*****************************5577888888775 PP
2zf-B_box26.11.8e-084791442
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                           C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  GSBRNA2T00082326001 47 LLCQVCEQSPAHVTCKADAAALCVTCDRDIHSAnplsrrHERVPV 91
                         68*****************************66899999*99986 PP
3CCT68.91.3e-23224267144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  GSBRNA2T00082326001 224 REARVLRYREKRKNRKFEKTIRYASRKAYAEVRPRIKGRFAKRT 267
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.8E-15148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.424148IPR000315B-box-type zinc finger
CDDcd000211.94E-8448No hitNo description
PfamPF006433.6E-7446IPR000315B-box-type zinc finger
PROSITE profilePS5011911.1634491IPR000315B-box-type zinc finger
PfamPF006439.7E-74791IPR000315B-box-type zinc finger
CDDcd000214.05E-84891No hitNo description
SMARTSM003361.6E-104991IPR000315B-box-type zinc finger
PfamPF062032.0E-17224266IPR010402CCT domain
PROSITE profilePS5101716.618224266IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MASRPCDSCR SAAATLFCRA DAAFLCGECD GKIHTANKLA SRHERVLLCQ VCEQSPAHVT  60
CKADAAALCV TCDRDIHSAN PLSRRHERVP VTPFYDAPSN ADVSMEAASW LLHNPSVKEG  120
GVEIPNLFAD LDYSGVDPKM EASENSSGND GVVPVQTRAL FLSEDYFNFD ISASKTTFPH  180
GFSCINQTVS STSLDVPLVP EGGAVVEMSR TTATPALQLS PAEREARVLR YREKRKNRKF  240
EKTIRYASRK AYAEVRPRIK GRFAKRTDSR VNDGGEVGVY GGFGVVPSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.83678e-66flower| leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082326001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0526900.0AF052690.1 Raphanus sativus CONSTANS-like 1 protein (COL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022573894.10.0zinc finger protein CONSTANS-LIKE 3-like
SwissprotQ9SK531e-143COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A078I6770.0A0A078I677_BRANA; BnaA04g14640D protein
STRINGBra032061.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-144CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]