PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00081486001

Common Name

GSBRNA2T00081486001, LOC106409375

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 314aa MW: 33691.9 Da PI: 7.8144

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00081486001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.1	3.8e-67	89	242	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 rs t+sC+dCGnqakkdC+h RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s + + +++++ ++ +s ++l GSBRNA2T00081486001 89 RSITISCRDCGNQAKKDCTHLRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGRGGSGGLSIPKRHRDTTLPGTSPSRL 178 67899***************************************************99988877555555555554567788888999 PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 +s ++ e+ ++++P+evss+a+frcv++s+vd+ g+ ++aYqt+v+igGh+fkGiLydqG+e+ GSBRNA2T00081486001 179 PSDSAGLEMGKATFPPEVSSDALFRCVKMSGVDEgGDGQYAYQTTVNIGGHLFKGILYDQGPES 242 ******************************8899**********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.7E-60	92	241	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.2E-26	94	136	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.2E-27	192	240	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MAGMFSLGGN NNNNNGDQEE GNQQQQKTNW VWYRSNTNTN NINPSSSVWQ IPPEQQILMH 60 HHQPHPQQQS IDLDPGHQID VSDISTSSRS ITISCRDCGN QAKKDCTHLR CRTCCKSRGF 120 DCSTHVRSTW IPVARRRERQ QQLHMSTSGG GGRGGSGGLS IPKRHRDTTL PGTSPSRLPS 180 DSAGLEMGKA TFPPEVSSDA LFRCVKMSGV DEGGDGQYAY QTTVNIGGHL FKGILYDQGP 240 ESSYMSGGSG GSDHHSSSAG GGNTSNTPAI ADGGRGGSSA MFVDPNSGSY YSSNMMTMFV 300 PPGTQFYQNP PRS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in the apical parts of the developing gynoecium. In carpels, first observed at late development stage in the most apical parts of the open-ended gynoecium. Accumulates in differentiating style and stigmatic tissues. Not expressed in the stigma after fertilization but remains in the style until full silique maturation. Also detected in anthers. In seedlings, present in the shoot apex and in cotyledons, leaf primordia, stipules, hydathodes and in primordia of lateral roots. Detected in developing trichomes and in leaf and pedicel attachment sites. {ECO:0000269\|PubMed:12361963}.
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, cauline leaves, flowers and siliques. {ECO:0000269\|PubMed:12361963}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00081486001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU205265	0.0	GU205265.1 Brassica rapa subsp. pekinensis stylish 2b (STY2b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013705477.1	0.0	protein SHI RELATED SEQUENCE 2
Swissprot	O65517	1e-147	SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBL	A0A078JN59	0.0	A0A078JN59_BRANA; BnaCnng61180D protein
STRING	Bo7g117860.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13648	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36260.1	1e-107	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Entrez Gene	106409375

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]