PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00071717001

Common Name

GSBRNA2T00071717001, LOC106380102

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 231aa MW: 24924.2 Da PI: 11.1222

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00071717001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.6	5.4e-39	35	189	3	117
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.... 88 +kk + +++hTkv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+q++p+i+ +tgt++++as++++++ s+s ++++ GSBRNA2T00071717001 35 VKKPPAKDRHTKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQSEPSIITATGTGTTPASFSTTSTCTISSSLDHKPllgs 124 79*************************************************************999998884333333333333335567 PP TCP 89 .....................................kaaksaa.kskksqksaasalnlakesrak 117 + a+ ++ ++++q++aa ++ +++r++ GSBRNA2T00071717001 125 spfilgkrvregsrgaipagswsvparpefgqvlsfaAGAPHEMfLQQHQQQQAA--AHFVHQQRQQ 189 7888888888889999999999999999999999987444444435555555555..5555555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.458	40	94	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.5E-32	40	184	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MFNTTNGVMI SNGDILERQR QKQQQQQPSE GALVVKKPPA KDRHTKVDGR GRRIRMPIIC 60 AARVFQLTRE LGHKSDGQTI EWLLRQSEPS IITATGTGTT PASFSTTSTC TISSSLDHKP 120 LLGSSPFILG KRVREGSRGA IPAGSWSVPA RPEFGQVLSF AAGAPHEMFL QQHQQQQAAA 180 HFVHQQRQQQ GAIGEASAAR VGNYLPGHLN LLASLSAGAP GSGRREYCPR *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.13957	1e-64	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00071717001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013618051.1	1e-169	PREDICTED: transcription factor TCP7-like
Refseq	XP_013675372.1	1e-169	transcription factor TCP7
Swissprot	Q9FMX2	6e-96	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A078HTY1	1e-168	A0A078HTY1_BRANA; BnaC02g41680D protein
TrEMBL	A0A0D3AY14	1e-168	A0A0D3AY14_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6D7S5	1e-168	A0A3P6D7S5_BRAOL; Uncharacterized protein
STRING	Bo2g160970.1	1e-168	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-72	TCP family protein

Link Out ? help Back to Top
Entrez Gene	106380102

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]