PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00070142001
Common NameGSBRNA2T00070142001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 323aa    MW: 36521.6 Da    PI: 5.2874
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00070142001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.32e-36842142120
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssa 70 
                          a+kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+s+t++WLl+++ + i el++                      +    
  GSBRNA2T00070142001  84 AVKKDRHSKIHTAQGLRDRRVRLSIGVARQFFDLQDMLGFDKASETLDWLLKKSRRGINELVQEkklnnkdgdygnnrggveedeE---- 169
                          89**************************************************************4443333222222222222220.... PP

                  TCP  71 seceaesssssasnsssg...........kaaksaa.kskksqksaasalnlakesrakara 120
                                           +           +++++   + kk++ks+ s   l+++ r k+++
  GSBRNA2T00070142001 170 -----------------DgdksfvygwspDSCEEVVyEVKKTEKSNISSKGLMDKARGKSKQ 214
                          .................122345556665445544444444444444444444444444433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.8E-3585192IPR005333Transcription factor, TCP
PROSITE profilePS5136934.03986144IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSSSNNDYNN GNSGVYPLSL YLSSLPGHQG IIRNPYNHQS TASPGQMVSA VPESLIDYMS  60
FNSNSAVNQK GYEIPEVSRE IKKAVKKDRH SKIHTAQGLR DRRVRLSIGV ARQFFDLQDM  120
LGFDKASETL DWLLKKSRRG INELVQEKKL NNKDGDYGNN RGGVEEDEED GDKSFVYGWS  180
PDSCEEVVYE VKKTEKSNIS SKGLMDKARG KSKQITREMV YDHPEAVSEI TQTEIMDPFK  240
RSIIFNEGDD MTHSFYKEAI QEFDNQECIL TKTNVNLPTD MDQSYNQHYG TFMLKDKGSS  300
SNYNTILPQN LDYVLVQDSS LA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-1491144154Putative transcription factor PCF6
5zkt_B8e-1491144154Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269|PubMed:11470410}.
UniprotTISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269|PubMed:11470410}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00070142001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892000.0AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127539.10.0PREDICTED: transcription factor TCP1-like
SwissprotQ9FYG71e-143TCP1_ARATH; Transcription factor TCP1
TrEMBLA0A078FKF50.0A0A078FKF5_BRANA; BnaA02g13010D protein
STRINGBra034010.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-135TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]