PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00068383001

Common Name

GSBRNA2T00068383001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 347aa MW: 37835.2 Da PI: 6.6681

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00068383001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	227.3	2.9e-70	115	274	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrel....ks 80 r+g+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaakrrerq+qla + +k++++a + +r+ ++ GSBRNA2T00068383001 115 RQGSMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQAQLAGLPTKRSREAssgggddD---DEREGDEngaqGG 201 7899**************************************************999888887766775432...2222222333345 PP DUF702 81 kkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 sal++ ++++a+s+ +e s+lP+evs +avfrc+rvss+dd++ee+aYqtav+igGhvfkGiLydqG+++ GSBRNA2T00068383001 202 GGGSALACIRVVNASSS-GFESSHLPPEVSLPAVFRCMRVSSIDDEDEEYAYQTAVNIGGHVFKGILYDQGPSD 274 66789999999999765.99*************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.6E-64	118	273	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.1E-27	120	162	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.1E-26	224	272	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MAGLFYLGGR DNNKQDHHHQ DKDHNEDRSN NYLHLYKDEI YNNNKGFEIW PPQYFQQQQE 60 QQNHVAPPTN FYSFGMVPSG SSHNNNRSSN RSLYFNVVSD HEPVRSSTGR FTVTRQGSMN 120 CQDCGNQAKK DCPHMRCRTC CKSRGFDCQT HVKSTWVPAA KRRERQAQLA GLPTKRSREA 180 SSGGGDDDDE REGDENGAQG GGGGSALACI RVVNASSSGF ESSHLPPEVS LPAVFRCMRV 240 SSIDDEDEEY AYQTAVNIGG HVFKGILYDQ GPSDDHRYSS SPAAVAAETS QHHLNLLASA 300 SSVATATGVT ASNINNASID PSLVYTAAPI NSFVTAATSF FASPRS*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MAGLFYLGGR DNNKQDHHHQ DKDHNEDRSN NYLHLYKDEI YNNNKGFEIW PPQYFQQQQE  60
QQNHVAPPTN FYSFGMVPSG SSHNNNRSSN RSLYFNVVSD HEPVRSSTGR FTVTRQGSMN  120
CQDCGNQAKK DCPHMRCRTC CKSRGFDCQT HVKSTWVPAA KRRERQAQLA GLPTKRSREA  180
SSGGGDDDDE REGDENGAQG GGGGSALACI RVVNASSSGF ESSHLPPEVS LPAVFRCMRV  240
SSIDDEDEEY AYQTAVNIGG HVFKGILYDQ GPSDDHRYSS SPAAVAAETS QHHLNLLASA  300
SSVATATGVT ASNINNASID PSLVYTAAPI NSFVTAATSF FASPRS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: In young plants, detected at a low level only in the root tips and lateral root primordia. In fully open flowers, primarily observed in the filaments and anthers. {ECO:0000269\|PubMed:20706774}.
Uniprot	TISSUE SPECIFICITY: Mainly expressed in the filaments of flowers, the shoot apex regions and pollen. Also present in leaves. {ECO:0000269\|PubMed:20706774}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00068383001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU205268	0.0	GU205268.1 Brassica rapa subsp. pekinensis short internode related sequence 7 (SRS7) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013708796.1	0.0	protein SHI RELATED SEQUENCE 7-like
Refseq	XP_013708797.1	0.0	protein SHI RELATED SEQUENCE 7-like
Refseq	XP_022558712.1	0.0	protein SHI RELATED SEQUENCE 7-like
Swissprot	Q9FXH7	0.0	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	A0A078JKD9	0.0	A0A078JKD9_BRANA; BnaCnng57210D protein
STRING	Bra025768.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	1e-151	SHI-related sequence 7

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]