PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00067672001
Common NameGSBRNA2T00067672001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 349aa    MW: 38995.2 Da    PI: 6.593
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00067672001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.62.9e-091356340
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         +r C+ + +k+++++C  ++ +lC++C +  H+       H++v
  GSBRNA2T00067672001 13 ARACDSCVKKRARWYCAADDAFLCQSCDTLVHSAnplarrHERV 56
                         578*****************************657888888876 PP
2CCT68.41.9e-23290333144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  GSBRNA2T00067672001 290 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 333
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.9E-101158IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8791158IPR000315B-box-type zinc finger
PfamPF006433.5E-81356IPR000315B-box-type zinc finger
CDDcd000216.11E-91458No hitNo description
PROSITE profilePS5101716.083290332IPR010402CCT domain
PfamPF062035.4E-18290332IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MKNLANAVGA KTARACDSCV KKRARWYCAA DDAFLCQSCD TLVHSANPLA RRHERVRLKS  60
ASPVATKYSS HNHSASCPPL EAATWHQGFT RKPRTPRGSG KKNNLSIFHD LVPEISAEDQ  120
TDSYEIEEQL ICQVPVLDPM VAEQFLNDVV EPKIEFPMIT IDDQEDEDNA ESCLNGFFPT  180
DMELEEFAAD VEILLAMNMG ICCEAIKNAD CIKVEEEEQK NVLMLSLNYE SVISTWGGQG  240
QPWLSREPPE RDIDISDKPV VSMEINGGES HHKHYVGGCL PSSGFGDGGR EARVSRYREK  300
RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV KRASLALSAA SSPLGVNY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300316RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.228750.0leaf| vegetative meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00067672001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115317.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
RefseqXP_013642118.10.0zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD00.0COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A078JN600.0A0A078JN60_BRANA; BnaAnng25560D protein
STRINGBra024750.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]