PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00059945001
Common NameGSBRNA2T00059945001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 385aa    MW: 42666.2 Da    PI: 6.5168
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00059945001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.47.8e-101356340
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         +r+C+++ +k++++fC  ++ +lC++C ++ H+       H++v
  GSBRNA2T00059945001 13 ARTCDNCLKKQAHWFCAADEAFLCQSCDTSVHSAnllarrHERV 56
                         689*****************************667888888876 PP
2CCT31.47e-12316339124
                  CCT   1 ReaallRYkeKrktRkFeKkirYe 24 
                          Rea+++RY+eK+ktR F K+irYe
  GSBRNA2T00059945001 316 REASVSRYREKKKTRSFTKTIRYE 339
                          9**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.4E-111158IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8931158IPR000315B-box-type zinc finger
PfamPF006434.2E-91356IPR000315B-box-type zinc finger
CDDcd000215.15E-101458No hitNo description
PfamPF062035.6E-7316340IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MKSLANCVRA KTARTCDNCL KKQAHWFCAA DEAFLCQSCD TSVHSANLLA RRHERVRLKD  60
STSPQQEAPT WYHGFTRKPR TPRGSGKRNN SSTFQDMVPE ISAEGQTDSS EVEGPLICQV  120
PVLGPTVVEP KIKFPTMRSG VMIDGHEDED KDESCLNGIF PTNMEVEDFA ADVETLLGHG  180
LDKESYTLEE LGLSNTEMFK KDEIEDKETK AMNMDIEIGD DDQGNRDGTL PGECVQAKEE  240
KKKNVLMLSL DYDQVISTWG GQGLPWTSGG PPELDINISG SPVVSKVSKR DNGRKSRKKR  300
RVGGCLPSSV VGDGGREASV SRYREKKKTR SFTKTIRYET VVPYDKETEE EVIAVLKIAM  360
ACLSISPEKS LSTKRNIKII CYSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00059945001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109881.20.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD01e-149COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A078HE990.0A0A078HE99_BRANA; BnaA08g19420D protein
STRINGBra010994.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-145B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]