PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00055479001
Common NameGSBRNA2T00055479001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 404aa    MW: 44493 Da    PI: 7.4402
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00055479001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.15.7e-06546237
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                         e + C+ ++e  + lfC+ +   lC  C ++ H        H
  GSBRNA2T00055479001  5 ERHPCDFCGERTAVLFCRADTAKLCLPCDQQVHTAnllskkH 46
                         6789***************************99544555555 PP
2zf-B_box22.32.7e-074980334
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                          ++C+++++++++  C++++  lC+dC    H
  GSBRNA2T00055479001 49 SQICDNCGNEPVSVRCFTDNLVLCQDCDWDVH 80
                         689************************98777 PP
3CCT62.11.8e-21356400144
                  CCT   1 ReaallRYkeKrktR.kFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R++a++RYkeKrktR +++K+irYesRKa+A++R RvKGrFvk++
  GSBRNA2T00055479001 356 RDNAMQRYKEKRKTRsRYDKTIRYESRKATADTRLRVKGRFVKAT 400
                          899************67**************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.4E-12451IPR000315B-box-type zinc finger
PROSITE profilePS501199.328451IPR000315B-box-type zinc finger
CDDcd000211.09E-8851No hitNo description
PROSITE profilePS501198.6034794IPR000315B-box-type zinc finger
CDDcd000212.45E-85180No hitNo description
SMARTSM003360.695294IPR000315B-box-type zinc finger
PROSITE profilePS5101712.54356399IPR010402CCT domain
PfamPF062037.7E-17356399IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSSSERHPCD FCGERTAVLF CRADTAKLCL PCDQQVHTAN LLSKKHVRSQ ICDNCGNEPV  60
SVRCFTDNLV LCQDCDWDVH GSCSVSDAHV RSAVEGFSGC PSALELAALL GIDLGGRKEE  120
NEGSSTTMMM MTTMESFGMK LDSWVTGSNV LQELVVPVPK ETTSFRKRGS SCGRYKQVLC  180
KQLEELLNNG DGEAREGLMV PEMTERMGRA RDAQEINSGG EVIQQPPTTS FTSLLWNADN  240
PSASSGGGRT TQIWDFNLGQ SRDTKDAYVT KDDKSFTINS FVDLMNDTCS TKPKGVKQIC  300
QDDCYRPTSS QVPATSESSN LPLTFSSEKG SNSAASCKTT RVVATKADLE QLAQYRDNAM  360
QRYKEKRKTR SRYDKTIRYE SRKATADTRL RVKGRFVKAT EAP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00055479001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013685410.10.0zinc finger protein CONSTANS-LIKE 15-like
SwissprotQ9C7E80.0COL15_ARATH; Zinc finger protein CONSTANS-LIKE 15
TrEMBLA0A078JIT70.0A0A078JIT7_BRANA; BnaCnng51750D protein
STRINGBo7g048510.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]