PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00054894001

Common Name

GSBRNA2T00054894001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 324aa MW: 36445.1 Da PI: 8.9427

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00054894001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	134.2	1.2e-41	103	228	3	133
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 +k+drhski+T++g+RdRR+Rls ++a++fF Lqd+LGfdk+sktieWL+ q+k++i + ++ +++ e ++++ +++ ++ak GSBRNA2T00054894001 103 KKRDRHSKICTAQGPRDRRMRLSQQIARKFFNLQDMLGFDKASKTIEWLISQSKASIRKVKES-VDASGGGEGDDEHLQDN-----EKAK 186 699**********************************************************.44442223333333333.....4555 PP TCP 93 saa.kskksqksaasalnlakesrakarararertrekmrik 133 +++ k +++++++ +++ ++kesr+kar+rarert km+++ GSBRNA2T00054894001 187 EETmKVSRRRTKTVENSCKKKESREKARERARERTLTKMKMR 228 555499999999999999999*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-33	103	165	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.366	104	162	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.068	207	226	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MFPSLDTSGY DLFDPFNPHQ ATMLPFFTTP IQSPSSHHHY PLSSFPFSSD FLDESVLISS 60 FLLAQQDAAT HVADCPRKLC KKLEDKCVGG TTLEKVPRRR TGKKRDRHSK ICTAQGPRDR 120 RMRLSQQIAR KFFNLQDMLG FDKASKTIEW LISQSKASIR KVKESVDASG GGEGDDEHLQ 180 DNEKAKEETM KVSRRRTKTV ENSCKKKESR EKARERARER TLTKMKMRIS GLIDTSKIFS 240 DPIQESQKIE LTGGAQVEGK SPEQESSTTN VNMVEYQMDS VRTIEKFLGL NSDASSSSIF 300 GDSEESYASL SQLEVLLQKQ VTT*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269\|PubMed:17307924}.
Uniprot	TISSUE SPECIFICITY: Expressed in axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269\|PubMed:17307924}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269\|PubMed:17307924}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00054894001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269\|PubMed:17307924}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013590580.1	0.0	PREDICTED: transcription factor TCP12-like isoform X1
Refseq	XP_022559724.1	0.0	transcription factor TCP12-like
Swissprot	A0AQW4	1e-124	TCP12_ARATH; Transcription factor TCP12
TrEMBL	A0A078H805	0.0	A0A078H805_BRANA; BnaC06g29550D protein
TrEMBL	A0A0D3CZ23	0.0	A0A0D3CZ23_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6GUI8	0.0	A0A3P6GUI8_BRAOL; Uncharacterized protein
STRING	Bo6g107240.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11632	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-103	TCP domain protein 12

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]