PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00049974001
Common NameGSBRNA2T00049974001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 394aa    MW: 43395.5 Da    PI: 6.93
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00049974001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93.1e-06638335
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                            C+ ++e  + lfC+ +   lC  C  + H 
  GSBRNA2T00049974001  6 RVPCDFCNERAAVLFCRADAAKLCLPCDRHVHT 38
                         678******99******************9994 PP
2zf-B_box223.3e-074980334
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                          ++C+++++++++  C++++  lC++C    H
  GSBRNA2T00049974001 49 SQICDNCGSEPVSVRCFTDSLVLCQECDWDVH 80
                         689************************97777 PP
3CCT66.67e-23345388144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R++a++RYkeKrk+R+++K+irYesRKa+A++R RvKGrFvk++
  GSBRNA2T00049974001 345 RDNAMQRYKEKRKNRRYDKTIRYESRKARADTRLRVKGRFVKAT 388
                          899***************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.513451IPR000315B-box-type zinc finger
SMARTSM003364.0E-12451IPR000315B-box-type zinc finger
CDDcd000211.93E-8751No hitNo description
CDDcd000212.35E-85180No hitNo description
SMARTSM003360.975294IPR000315B-box-type zinc finger
PROSITE profilePS5101715.1345387IPR010402CCT domain
PfamPF062032.3E-17345387IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MSSSERVPCD FCNERAAVLF CRADAAKLCL PCDRHVHTAN LLSKKHVRSQ ICDNCGSEPV  60
SVRCFTDSLV LCQECDWDVH GSCSVSDAHV RSVVEGFTGC PSALELGALW GIDLEGRKEE  120
EKQVPVRMES FGMELDSWIS GSNVLQELVV PVPKKGGSSC GRYKQVLGKQ LEELLRSGGG  180
GDDGGDEEEI SGGGGEVNQQ PPTTSFTSLL WNASDGQKQS TQIWDFNLGQ SREPEVNSRM  240
EAAAYVTKDA ASFKINSFVE VKKNDTCSTK AKGVKEIFQD DYNQSTSGQV PVTYESNNLP  300
ISFGSEKGSN SSSELNFTEK FAGTSCKSTR LVATKADLER LAQNRDNAMQ RYKEKRKNRR  360
YDKTIRYESR KARADTRLRV KGRFVKATEA PYP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.159100.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00049974001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891940.0AC189194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003O07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629289.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15
RefseqXP_013685305.10.0zinc finger protein CONSTANS-LIKE 15-like
SwissprotQ9C7E80.0COL15_ARATH; Zinc finger protein CONSTANS-LIKE 15
TrEMBLA0A078FBI50.0A0A078FBI5_BRANA; BnaC03g58230D protein
STRINGBo3g143010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.21e-145B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]