PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00049221001

Common Name

GSBRNA2T00049221001, LOC106442949

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 320aa MW: 37816.2 Da PI: 6.0524

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00049221001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.1	3.1e-25	46	128	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++L+ +r+e+++++ ++k++k lWe v++km+++gf rs++qCk+kw+nl +ryk+++++e + s++++p++++++ GSBRNA2T00049221001 46 QWSIEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARSAEQCKSKWKNLVTRYKACETTEPEA---SRQQFPFYSEIQ 128 7******************************************************************85...56679*9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	7.02E-23	45	107	No hit	No description
Pfam	PF13837	5.7E-21	46	129	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.6E-4	46	102	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.037	47	103	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MDRRNPFHHH EHQLYHLIQQ QQLPLPPQST MAAMDSGGGG GERIPQWSIE ETKELLGIRE 60 ELDQTFMETK RNKLLWEVVA AKMADKGFAR SAEQCKSKWK NLVTRYKACE TTEPEASRQQ 120 FPFYSEIQSI FTARMQRNLW SEPTEGSTSS KRKHHQFSSD EEEEDQVEEP NQDINEELLS 180 FIETDKKEAE VITTSTSTDP RKRVKKGKGI FTGSTKAETA GSTLKEILED FMRQTVKMEK 240 EWIASWEMKE REREKREHEW RRRMADLEEE RAAAERRWME REDERRLREE ARARKRDTLI 300 DALLNKLNRD HNDDHYQGF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269\|PubMed:15044016}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269\|PubMed:15044016}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00049221001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189362	0.0	AC189362.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045I17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013740024.1	0.0	trihelix transcription factor GT-3a
Swissprot	Q9SDW0	1e-142	TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBL	A0A078FGM7	0.0	A0A078FGM7_BRANA; BnaA03g00390D protein
TrEMBL	A0A3P5ZCN2	0.0	A0A3P5ZCN2_BRACM; Uncharacterized protein
STRING	Bra005688.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2215	28	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	1e-128	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	106442949

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]