PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00045079001
Common NameGSBRNA2T00045079001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 388aa    MW: 42791.3 Da    PI: 7.647
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00045079001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.31.2e-06646337
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                            C+ ++e  + lfC+ +   lC +C  + Hk       H
  GSBRNA2T00045079001  6 RVPCDFCGERTAVLFCRADAAKLCLSCDHHVHKAnllsrkH 46
                         678*******9*********************865666656 PP
2zf-B_box21.45.1e-075085437
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                          +C+ +++++++  C++++  lC++C    H +  H
  GSBRNA2T00045079001 50 LICDSCGNEPVSVRCFTDDLVLCQECDWDVHGScsH 85
                         68************************9888844666 PP
3CCT65.61.4e-22339382144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R +a++RYkeKrk+R+++K+irYesRKa+A++R RvKGrFvk++
  GSBRNA2T00045079001 339 RGNAMQRYKEKRKNRRYDKTIRYESRKARADTRLRVKGRFVKAT 382
                          7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.0E-12451IPR000315B-box-type zinc finger
PROSITE profilePS501199.385451IPR000315B-box-type zinc finger
CDDcd000219.84E-8751No hitNo description
PROSITE profilePS501198.5174790IPR000315B-box-type zinc finger
CDDcd000215.49E-85180No hitNo description
SMARTSM003360.55290IPR000315B-box-type zinc finger
PROSITE profilePS5101714.942339381IPR010402CCT domain
PfamPF062034.6E-17339381IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSSSERVPCD FCGERTAVLF CRADAAKLCL SCDHHVHKAN LLSRKHVRSL ICDSCGNEPV  60
SVRCFTDDLV LCQECDWDVH GSCSHVRSAV EGFSGCPSAL ELAALLGVDL EGRKEEKEVP  120
LMMTMESFGM ELDSWGFGSN VLQELIVPVT NDTTTFKKRS SSCGRYKQVL CKQLEELLKG  180
EDNDGDGGGE AKEGIMVPFI HQPPTTSFSS LISGCQSTQI WDFNLGQSRE PEDTIRTEAA  240
ACVTKDAASF KVNSIVKLLN DACSTKAKRV KEIFQDGYKR STSGQVPATS ENNNNLPITF  300
GSNTSNELCF TENTGGTSCN KATRVVATKA DLEQLAQNRG NAMQRYKEKR KNRRYDKTIR  360
YESRKARADT RLRVKGRFVK ATEAPYP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.253041e-55flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00045079001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013662492.10.0zinc finger protein CONSTANS-LIKE 15-like
SwissprotQ9C7E81e-178COL15_ARATH; Zinc finger protein CONSTANS-LIKE 15
TrEMBLA0A078GV450.0A0A078GV45_BRANA; BnaA04g24860D protein
STRINGBra041077.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.21e-135B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]