PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00041590001

Common Name

GSBRNA2T00041590001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 355aa MW: 40201.9 Da PI: 5.8637

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00041590001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.1	3.2e-38	85	235	2	128
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec.eaessss 80 a+kkdrhskihT++g+R RRvRls+ + ++fFdLqd+LGfdk+skt++WLl+++ +aikel++ +++ + + e++ GSBRNA2T00041590001 85 AVKKDRHSKIHTAQGLRERRVRLSIGISRQFFDLQDMLGFDKASKTLDWLLKKSRRAIKELVQEkklnnnvedfGNEGGNVVhEED---- 170 89**************************************************************4443333322111112222111.... PP TCP 81 sasnsssg.......................kaaksaakskksqksaasalnlak.esrakarararertre 128 + ++ + k+ +++k++++++n + sraka+ +a+ tr+ GSBRNA2T00041590001 171 -------DydydddnvgdnnfvyglspysfeEEVLCEVKKAEKRKKKTEMSNTSSkGSRAKAKGKAKGLTRD 235 .......12233444556788999999999744444445555555555666665559999999999887775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-36	86	234	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.939	87	145	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MSSSNNGYNN GSNNGVFPLS LYLSSLSGHQ DIICNPYNHQ LTASPGQMVS AVPESLMDYM 60 AFNSNNVMNQ QGFEIPEVSR EMKKAVKKDR HSKIHTAQGL RERRVRLSIG ISRQFFDLQD 120 MLGFDKASKT LDWLLKKSRR AIKELVQEKK LNNNVEDFGN EGGNVVHEED DYDYDDDNVG 180 DNNFVYGLSP YSFEEEVLCE VKKAEKRKKK TEMSNTSSKG SRAKAKGKAK GLTRDMINDH 240 PETASEIIQT EIMDPFKRSI IFNEGEEMTH SFYKESIQES DNHECITKTK VNLPMNMDQG 300 YNQHYGALML KDQGSSSNYN AILPQNLDCD YNPNPFIDQL FCGVTNTNFF RGIV*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MSSSNNGYNN GSNNGVFPLS LYLSSLSGHQ DIICNPYNHQ LTASPGQMVS AVPESLMDYM  60
AFNSNNVMNQ QGFEIPEVSR EMKKAVKKDR HSKIHTAQGL RERRVRLSIG ISRQFFDLQD  120
MLGFDKASKT LDWLLKKSRR AIKELVQEKK LNNNVEDFGN EGGNVVHEED DYDYDDDNVG  180
DNNFVYGLSP YSFEEEVLCE VKKAEKRKKK TEMSNTSSKG SRAKAKGKAK GLTRDMINDH  240
PETASEIIQT EIMDPFKRSI IFNEGEEMTH SFYKESIQES DNHECITKTK VNLPMNMDQG  300
YNQHYGALML KDQGSSSNYN AILPQNLDCD YNPNPFIDQL FCGVTNTNFF RGIV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-14	92	145	1	54	Putative transcription factor PCF6
5zkt_B	4e-14	92	145	1	54	Putative transcription factor PCF6
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269\|PubMed:11470410}.
Uniprot	TISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269\|PubMed:11470410}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in petal morphogenesis. {ECO:0000269\|PubMed:17940055}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00041590001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013590902.1	0.0	PREDICTED: transcription factor TCP1-like
Refseq	XP_013590903.1	0.0	PREDICTED: transcription factor TCP1-like
Refseq	XP_013590904.1	0.0	PREDICTED: transcription factor TCP1-like
Refseq	XP_013722428.1	0.0	transcription factor TCP1-like
Swissprot	Q9FYG7	1e-158	TCP1_ARATH; Transcription factor TCP1
TrEMBL	A0A078GW88	0.0	A0A078GW88_BRANA; BnaC06g26860D protein
STRING	Bo6g099040.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6733	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.1	1e-138	TCP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]